POPTR_0012s04070 (Populus trichocarpa)
NFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01422 (zf-NF-X1) IPR000967 POPTR_0012s04070 T300768_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s04070.1 NFX 142 161
POPTR_0012s04070.1 NFX 189 217
POPTR_0012s04070.1 NFX 263 281
POPTR_0012s04070.1 NFX 321 339
POPTR_0012s04070.1 NFX 379 390
POPTR_0012s04070.1 NFX 417 435
POPTR_0012s04070.1 NFX 474 491
POPTR_0012s04070.1 NFX 527 545
POPTR_0012s04070.1 NFX 555 586

Links

Other NFX family TFs
Other Populus trichocarpa TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava4965.m1 Manihot esculenta cassava4965.m1 N 0.881
GLYMA08G06040 Glycine max GLYMA08G06040 N 0.875
TCM_012484 Theobroma cacao TCM_012484 N 0.856
Ciclev10018607m.g Citrus clementina Ciclev10018607m.g N 0.852
orange1.1g001378m.g Citrus sinensis orange1.1g001378m.g N 0.852
GLYMA09G30343 Glycine max GLYMA09G30343 N 0.850
SapurV1A.0082s0290 Salix purpurea SapurV1A.0082s0290 N 0.850
Cucsa.122080 Cucumis sativus Cucsa.122080 N 0.844
TCM_017029 Theobroma cacao TCM_017029 N 0.844
Lus10034470.g Linum usitatissimum Lus10034470.g N 0.838
Bo5g010600 Brassica oleracea Bo5g010600 N 0.838
Bra019958 Brassica rapa Bra019958 N 0.838
Gorai.006G058600 Gossypium raimondii Gorai.006G058600 N 0.836
Lus10025071.g Linum usitatissimum Lus10025071.g N 0.831
PK00983.1 Cannabis sativa PK00983.1 N 0.825
GLYMA07G11834 Glycine max GLYMA07G11834 N 0.825
ATNFXL1 Arabidopsis thaliana AT1G10170 N 0.825
Eucgr.H00552 Eucalyptus grandis Eucgr.H00552 N 0.819
ATNFXL1 Arabidopsis lyrata fgenesh2_kg.1__1086__AT1G10170.1 N 0.819
fgenesh1_pg.C_scaffold_1003098 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003098 N 0.819
Eucgr.K02284 Eucalyptus grandis Eucgr.K02284 N 0.815
Carubv10008145m.g Capsella rubella Carubv10008145m.g N 0.812
Cagra.1508s0074 Capsella grandiflora Cagra.1508s0074 N 0.812
Aquca_032_00102 Aquilegia coerulea Aquca_032_00102 N 0.812
Aquca_044_00077 Aquilegia coerulea Aquca_044_00077 N 0.806
Cla018720 Citrullus lanatus Cla018720 N 0.806
Bra031704 Brassica rapa Bra031704 N 0.801
POPTR_0015s05030 Populus trichocarpa POPTR_0015s05030 N 0.794
GRMZM2G087787 Zea mays GRMZM2G087787 N 0.787
Sb04g038100 Sorghum bicolor Sb04g038100 N 0.781
27791.m000083 Ricinus communis 27791.m000083 N 0.781
Sb10g009070 Sorghum bicolor Sb10g009070 N 0.781
MDP0000280911 Malus domestica MDP0000280911 N 0.762
PRUPE_ppa000543mg Prunus persica PRUPE_ppa000543mg N 0.762
Pm025049 Prunus mume Pm025049 N 0.762
Bo8g059130 Brassica oleracea Bo8g059130 N 0.756
Bra018458 Brassica rapa Bra018458 N 0.750
Ca_16794 Cicer arietinum Ca_16794 N 0.744
MDP0000603846 Malus domestica MDP0000603846 N 0.700
mgf004430m Mimulus guttatus mgf004430m N 0.700