nfkb1 (Xenopus tropicalis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 XB-GENE-985746 T317876_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFKB1
M03448_2.00 		Homo sapiens
MGGGGAWTCCCCT
AGGGGAWTCCCCK		 SELEX
Jolma et al.(2013)
NFKB1_1 		0.811 0.811
NFKB1
M05887_2.00 		Homo sapiens
NGGKRNTYYCCCN
NGGGRRANYMCCN		 SMiLE-seq
Isakova et al.(2017)
NFKB1 		0.811 0.811
NFKB1
M09348_2.00 		Homo sapiens
HYTTCCCY
RGGGAARD		 Misc
Kulakovskiy et al.(2013)
NFKB1_HUMAN.H11MO.0.A 		0.811 0.811
NFKB1
M11228_2.00 		Homo sapiens
GGGGATYCCC
GGGRATCCCC		 Transfac
Matys et al.(2006)
V$NFKAPPAB50_01 		0.811 0.811
NFKB1
M11229_2.00 		Homo sapiens
NGGGAHTYYCCM
KGGRRADTCCCN		 Transfac
Matys et al.(2006)
V$NFKB_C 		0.811 0.811
NFKB1
M11230_2.00 		Homo sapiens
DKGGGAMTTYCCNN
NNGGRAAKTCCCMH		 Transfac
Matys et al.(2006)
V$NFKB_Q6 		0.811 0.811
NFKB1
M11231_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P50_Q6 		0.811 0.811
Nfkb1
M09358_2.00 		Mus musculus
GGGRNTTYCCC
GGGRAANYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB1_MOUSE.H11MO.0.A 		0.805 0.805
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002934805 Rel 43 238

Links

Other Rel family TFs
Other Xenopus tropicalis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nfkb1.L Xenopus laevis XB-GENE-985749 I 0.941
NFKB1 Sus scrofa ENSSSCG00000030957 I 0.905
ENSMPUG00000009413 Mustela putorius furo ENSMPUG00000009413 I 0.811
NFKB1 Macaca mulatta ENSMMUG00000003736 I 0.811
NFKB1 Myotis lucifugus ENSMLUG00000005986 I 0.811
NFKB1 Vicugna pacos ENSVPAG00000000280 I 0.811
ENSNLEG00000013325 Nomascus leucogenys ENSNLEG00000013325 I 0.811
NFKB1 Tupaia belangeri ENSTBEG00000003520 I 0.811
Nfkb1 Rattus norvegicus ENSRNOG00000023258 I 0.811
NFKB1 Pteropus vampyrus ENSPVAG00000002722 I 0.811
NFKB1 Pan troglodytes ENSPTRG00000016320 I 0.811
NFKB1 Gorilla gorilla ENSGGOG00000009071 I 0.811
ENSAMEG00000008882 Ailuropoda melanoleuca ENSAMEG00000008882 I 0.811
NFKB1 Tursiops truncatus ENSTTRG00000010852 I 0.811
Myotis_brandtii_NFKB1_10013135 Myotis brandtii Myotis_brandtii_NFKB1_10013135 I 0.811
ENSCSAG00000004049 Chlorocebus sabaeus ENSCSAG00000004049 I 0.811
NFKB1 Canis familiaris ENSCAFG00000010730 I 0.811
NFKB1 Homo sapiens ENSG00000109320 D 0.811
ENSP00000226574 Macaca fascicularis ENSP00000226574 I 0.811
ENSOANG00000028755 Ornithorhynchus anatinus ENSOANG00000028755 I 0.809
NFKB1 Felis catus ENSFCAG00000007557 I 0.805
NFKB1 Dasypus novemcinctus ENSDNOG00000006855 I 0.805
NFKB1 Loxodonta africana ENSLAFG00000009344 I 0.805
ENSSTOG00000011445 Ictidomys tridecemlineatus ENSSTOG00000011445 I 0.805
NFKB1 Callithrix jacchus ENSCJAG00000015382 I 0.805
ENSOARG00000012718 Ovis aries ENSOARG00000012718 I 0.805
ENSBTAP00000027016-D1 Bos grunniens ENSBTAP00000027016-D1 I 0.805
NFKB1 Monodelphis domestica ENSMODG00000020672 I 0.805
ENSSHAG00000007374 Sarcophilus harrisii ENSSHAG00000007374 I 0.805
Nfkb1 Mus musculus ENSMUSG00000028163 D 0.805
NFKB1 Bos taurus ENSBTAG00000020270 I 0.805
ENSPPYG00000014965 Pongo abelii ENSPPYG00000014965 I 0.805
NFKB1 Otolemur garnettii ENSOGAG00000012840 I 0.799
ENSMEUG00000001334 Macropus eugenii ENSMEUG00000001334 I 0.799
Nfkb1 Dipodomys ordii ENSDORG00000007447 I 0.793
NFKB1 Procavia capensis ENSPCAG00000008172 I 0.793
NFKB1 Cavia porcellus ENSCPOG00000007789 I 0.793
NFKB1 Oryctolagus cuniculus ENSOCUG00000021712 I 0.787
NFKB1 Ochotona princeps ENSOPRG00000005212 I 0.787
ENSFALG00000008136 Ficedula albicollis ENSFALG00000008136 I 0.775
NFKB1 Taeniopygia guttata ENSTGUG00000003595 I 0.775
ENSPANG00000023882 Papio anubis ENSPANG00000023882 I 0.775
NFKB1 Gallus gallus ENSGALG00000012304 I 0.769
Gfo_R000994 Geospiza fortis Gfo_R000994 I 0.769
Tal_R004861 Tyto alba Tal_R004861 I 0.769
Brh_R011794 Buceros rhinoceros Brh_R011794 I 0.769
Alligator_sinensis_CCG005309.1 Alligator sinensis Alligator_sinensis_CCG005309.1 I 0.769
NFKB1 Meleagris gallopavo ENSMGAG00000011299 I 0.769
Afo_R015662 Aptenodytes forsteri Afo_R015662 I 0.769
ENSAPLG00000013878 Anas platyrhynchos ENSAPLG00000013878 I 0.763
Aan_R012729 Calypte anna Aan_R012729 I 0.763
NFKB1 Equus caballus ENSECAG00000015042 I 0.757
ENSPSIG00000008515 Pelodiscus sinensis ENSPSIG00000008515 I 0.751
Pvit_05196 Pogona vitticeps Pvit_05196 I 0.740
ENSLACG00000002751 Latimeria chalumnae ENSLACG00000002751 I 0.722
Ogr10707 Ophisaurus gracilis Ogr10707 I 0.704