PK08477.1 (Cannabis sativa)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 PK08477.1 T321531_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK08477.1 S1FA 10 75

Links

Other S1FA family TFs
Other Cannabis sativa TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.833
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.833
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.833
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.833
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.833
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.818
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.818
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.818
mgf000337m Mimulus guttatus mgf000337m I 0.803
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.803
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.788
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.788
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.788
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.773
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.773
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.773
mgf004062m Mimulus guttatus mgf004062m I 0.773
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.773
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.773
TCM_022113 Theobroma cacao TCM_022113 I 0.758
Cla018106 Citrullus lanatus Cla018106 I 0.758
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.758
Cla018556 Citrullus lanatus Cla018556 I 0.758
Ca_12027 Cicer arietinum Ca_12027 I 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.758
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.758
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.758
S1FA3 Arabidopsis thaliana AT3G09735 D 0.758
Bra029784 Brassica rapa Bra029784 I 0.758
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.758
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.758
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.758
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.758
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.758
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.742
MDP0000276000 Malus domestica MDP0000276000 N 0.742
Ca_12028 Cicer arietinum Ca_12028 I 0.742
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.742
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.742
Bra034084 Brassica rapa Bra034084 I 0.742
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.742
Bo1g144300 Brassica oleracea Bo1g144300 I 0.742
Bo5g138130 Brassica oleracea Bo5g138130 I 0.742
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.734
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.727
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.727
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.727
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.727
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.727
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.727
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.727
29805.m001471 Ricinus communis 29805.m001471 I 0.727
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.727
Pm002519 Prunus mume Pm002519 N 0.712
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.712
S1FA1 Arabidopsis thaliana AT3G53370 I 0.712
Bo3g061880 Brassica oleracea Bo3g061880 I 0.712
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.712
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.712
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.712
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.712
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.712
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.712