Cla018556 (Citrullus lanatus)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Cla018556 T321459_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018556 S1FA 24 89

Links

Other S1FA family TFs
Other Citrullus lanatus TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.939
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.894
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.894
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.879
Cla018106 Citrullus lanatus Cla018106 I 0.864
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.864
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.864
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.864
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.864
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.864
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.848
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.848
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.848
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.833
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.833
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.833
Pm002519 Prunus mume Pm002519 N 0.833
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.833
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.833
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.833
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.833
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.833
TCM_022113 Theobroma cacao TCM_022113 I 0.833
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.833
MDP0000559232 Malus domestica MDP0000559232 N 0.821
mgf000337m Mimulus guttatus mgf000337m I 0.818
29805.m001471 Ricinus communis 29805.m001471 I 0.818
Ca_12027 Cicer arietinum Ca_12027 I 0.818
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.818
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.818
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.818
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.818
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.803
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.803
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.803
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.803
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.803
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.788
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.788
Ca_12028 Cicer arietinum Ca_12028 I 0.788
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.788
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.788
mgf004062m Mimulus guttatus mgf004062m I 0.788
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.788
MDP0000276000 Malus domestica MDP0000276000 N 0.788
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.788
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.786
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.773
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.773
OB04G18780 Oryza brachyantha OB04G18780 I 0.773
TRIUR3_32840 Triticum urartu TRIUR3_32840 N 0.771
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.758
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.758
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.758
OB04G18770 Oryza brachyantha OB04G18770 I 0.758
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.758
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.758
OBART04G11660 Oryza barthii OBART04G11660 N 0.758
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.758
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.758
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.758
OS04G0408900 Oryza sativa OS04G0408900 N 0.758
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.758
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.758
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.758
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.758
PK08477.1 Cannabis sativa PK08477.1 I 0.758
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.758
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.758
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.758
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.758
Si011030m.g Setaria italica Si011030m.g N 0.758
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.742
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.742
Bo00703s150 Brassica oleracea Bo00703s150 I 0.742
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.742
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.742
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.742
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.742
OBART04G11650 Oryza barthii OBART04G11650 N 0.742
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.742
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.742
S1FA2 Oryza sativa OS04G0408700 N 0.742
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.742
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.742
Bo00703s130 Brassica oleracea Bo00703s130 I 0.742
S1FA1 Arabidopsis thaliana AT3G53370 I 0.742
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.727
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.727
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.727
Bo6g067310 Brassica oleracea Bo6g067310 I 0.727
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.727
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.727
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.727
Bra003132 Brassica rapa Bra003132 I 0.727
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.727
Bra039779 Brassica rapa Bra039779 I 0.727
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.712
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.712
Bra029784 Brassica rapa Bra029784 I 0.712
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.712
S1FA3 Arabidopsis thaliana AT3G09735 D 0.712