Carubv10018341m.g (Capsella rubella)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Carubv10018341m.g T321490_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018341m S1FA 11 76

Links

Other S1FA family TFs
Other Capsella rubella TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 1.000
S1FA1 Arabidopsis thaliana AT3G53370 I 0.955
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.955
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.924
Bo6g067310 Brassica oleracea Bo6g067310 I 0.909
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.909
Bra003132 Brassica rapa Bra003132 I 0.909
Bra006994 Brassica rapa Bra006994 I 0.894
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.864
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.848
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.848
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.848
Bo00703s150 Brassica oleracea Bo00703s150 I 0.833
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.833
Bo00703s130 Brassica oleracea Bo00703s130 I 0.833
S1FA2 Arabidopsis thaliana AT2G37120 I 0.833
Bra039779 Brassica rapa Bra039779 I 0.818
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.773
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.773
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.773
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.773
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.773
mgf000337m Mimulus guttatus mgf000337m I 0.758
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.758
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.758
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.758
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.758
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.758
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.758
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.742
Bra029784 Brassica rapa Bra029784 I 0.742
Cla018106 Citrullus lanatus Cla018106 I 0.742
Bo3g061880 Brassica oleracea Bo3g061880 I 0.742
S1FA3 Arabidopsis thaliana AT3G09735 D 0.742
Cla018556 Citrullus lanatus Cla018556 I 0.742
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.742
TCM_022113 Theobroma cacao TCM_022113 I 0.742
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.742
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.742
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.742
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.742
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.742
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.742
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.742
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.742
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.727
Si011030m.g Setaria italica Si011030m.g N 0.727
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.727
29805.m001471 Ricinus communis 29805.m001471 I 0.727
OB04G18780 Oryza brachyantha OB04G18780 I 0.727
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.727
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.727
Bo5g138130 Brassica oleracea Bo5g138130 I 0.727
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.727
OB04G18770 Oryza brachyantha OB04G18770 I 0.727
Pm002519 Prunus mume Pm002519 N 0.727
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.727
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.727
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.727
mgf004062m Mimulus guttatus mgf004062m I 0.712
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.712
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.712
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.712
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.712
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.712
OBART04G11650 Oryza barthii OBART04G11650 N 0.712
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.712
OBART04G11660 Oryza barthii OBART04G11660 N 0.712
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.712
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.712
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.712
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.712
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.712
Bo1g144300 Brassica oleracea Bo1g144300 I 0.712
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.712
Bra034084 Brassica rapa Bra034084 I 0.712
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.712
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.712
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.712
OS04G0408900 Oryza sativa OS04G0408900 N 0.712
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.712
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.712
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.712
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.712
S1FA2 Oryza sativa OS04G0408700 N 0.712
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.712
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.712
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.712
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.712
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.712
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.712
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.712
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.712