Cucsa.124240 (Cucumis sativus)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Cucsa.124240 T321470_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.124240.1 S1FA 24 89

Links

Other S1FA family TFs
Other Cucumis sativus TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla018556 Citrullus lanatus Cla018556 I 0.939
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.879
Cla018106 Citrullus lanatus Cla018106 I 0.879
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.879
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.879
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.879
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.864
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.864
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.864
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.864
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.848
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.848
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.848
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.848
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.848
TCM_022113 Theobroma cacao TCM_022113 I 0.848
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.833
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.833
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.833
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.833
Pm002519 Prunus mume Pm002519 N 0.833
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.833
29805.m001471 Ricinus communis 29805.m001471 I 0.833
mgf000337m Mimulus guttatus mgf000337m I 0.833
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.833
mgf004062m Mimulus guttatus mgf004062m I 0.818
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.818
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.818
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.818
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.818
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.818
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.818
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.803
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.803
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.803
Ca_12027 Cicer arietinum Ca_12027 I 0.803
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.803
MDP0000276000 Malus domestica MDP0000276000 N 0.788
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.788
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.788
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.788
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.786
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.773
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.773
OS04G0408900 Oryza sativa OS04G0408900 N 0.773
Ca_12028 Cicer arietinum Ca_12028 I 0.773
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.773
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.773
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.773
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.773
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.773
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.773
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.773
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.773
OBART04G11660 Oryza barthii OBART04G11660 N 0.773
OB04G18780 Oryza brachyantha OB04G18780 I 0.773
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.773
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.773
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.773
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.773
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.773
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.773
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.758
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.758
OB04G18770 Oryza brachyantha OB04G18770 I 0.758
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.758
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.758
Bo00703s130 Brassica oleracea Bo00703s130 I 0.758
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.758
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.758
Si011030m.g Setaria italica Si011030m.g N 0.758
Bo00703s150 Brassica oleracea Bo00703s150 I 0.758
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.758
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.758
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.758
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.742
S1FA1 Arabidopsis thaliana AT3G53370 I 0.742
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.742
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.742
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.742
Bo6g067310 Brassica oleracea Bo6g067310 I 0.742
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.742
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.742
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.742
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.742
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.742
S1FA2 Oryza sativa OS04G0408700 N 0.742
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.742
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.742
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.742
OBART04G11650 Oryza barthii OBART04G11650 N 0.742
Bra029784 Brassica rapa Bra029784 I 0.742
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.742
Bra039779 Brassica rapa Bra039779 I 0.742
Bra003132 Brassica rapa Bra003132 I 0.742
PK08477.1 Cannabis sativa PK08477.1 I 0.742
S1FA2 Arabidopsis thaliana AT2G37120 I 0.727
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.727
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.727
Bo5g138130 Brassica oleracea Bo5g138130 I 0.727
Bo3g061880 Brassica oleracea Bo3g061880 I 0.727
S1FA3 Arabidopsis thaliana AT3G09735 D 0.727
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.727
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.719
Bra006994 Brassica rapa Bra006994 I 0.712
Bra034084 Brassica rapa Bra034084 I 0.712
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.712
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.712
Bo1g144300 Brassica oleracea Bo1g144300 I 0.712
MDP0000559232 Malus domestica MDP0000559232 N 0.712