Carubv10015035m.g (Capsella rubella)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Carubv10015035m.g T321489_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.970 0.970
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015035m S1FA 8 73

Links

Other S1FA family TFs
Other Capsella rubella TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra029784 Brassica rapa Bra029784 I 1.000
Bo5g138130 Brassica oleracea Bo5g138130 I 0.985
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.985
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.984
Bra034084 Brassica rapa Bra034084 I 0.970
Bo1g144300 Brassica oleracea Bo1g144300 I 0.970
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.970
S1FA3 Arabidopsis thaliana AT3G09735 D 0.970
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.970
Bo3g061880 Brassica oleracea Bo3g061880 I 0.939
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.833
S1FA1 Arabidopsis thaliana AT3G53370 I 0.824
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.818
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.818
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.803
S1FA2 Arabidopsis thaliana AT2G37120 I 0.803
mgf004062m Mimulus guttatus mgf004062m I 0.803
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.788
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.788
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.788
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.788
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.788
Bo6g067310 Brassica oleracea Bo6g067310 I 0.788
Bra003132 Brassica rapa Bra003132 I 0.788
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.788
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.773
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.773
TCM_022113 Theobroma cacao TCM_022113 I 0.773
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.773
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.773
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.773
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.773
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.773
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.773
Bo00703s130 Brassica oleracea Bo00703s130 I 0.773
Bo00703s150 Brassica oleracea Bo00703s150 I 0.773
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.773
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.773
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.758
Bra039779 Brassica rapa Bra039779 I 0.758
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.758
Bra006994 Brassica rapa Bra006994 I 0.758
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.758
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.758
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.758
PK08477.1 Cannabis sativa PK08477.1 I 0.758
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.758
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.758
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.758
mgf000337m Mimulus guttatus mgf000337m I 0.742
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.742
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.742
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.742
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.742
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.742
Cla018106 Citrullus lanatus Cla018106 I 0.742
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.742
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.742
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.727
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.727
Ca_12027 Cicer arietinum Ca_12027 I 0.727
OB04G18770 Oryza brachyantha OB04G18770 I 0.727
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.727
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.727
29805.m001471 Ricinus communis 29805.m001471 I 0.727
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.727
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.727
MDP0000559232 Malus domestica MDP0000559232 N 0.714
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.712
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.712
OB04G18780 Oryza brachyantha OB04G18780 I 0.712
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.712
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.712
OBART04G11660 Oryza barthii OBART04G11660 N 0.712
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.712
OS04G0408900 Oryza sativa OS04G0408900 N 0.712
Ca_12028 Cicer arietinum Ca_12028 I 0.712
Cla018556 Citrullus lanatus Cla018556 I 0.712
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.712
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.712
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.712
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.712
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.712
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.712
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.712
estExt_fgenesh1_pg.C_340230 Physcomitrella patens estExt_fgenesh1_pg.C_340230 N 0.703