S1FA2 (Arabidopsis thaliana)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 AT2G37120 T321339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
S1FA3
M07252_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT3G09735_col_a
0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G37120.1 S1FA 11 76

Links

Other S1FA family TFs
Other Arabidopsis thaliana TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.955
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.939
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.939
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.939
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.909
Bra003132 Brassica rapa Bra003132 I 0.879
Bo6g067310 Brassica oleracea Bo6g067310 I 0.879
S1FA1 Arabidopsis thaliana AT3G53370 I 0.864
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.864
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.848
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.833
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.833
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.833
Bra006994 Brassica rapa Bra006994 I 0.833
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.818
Bo1g144300 Brassica oleracea Bo1g144300 I 0.803
Bra034084 Brassica rapa Bra034084 I 0.803
Bo00703s150 Brassica oleracea Bo00703s150 I 0.803
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.803
Bo00703s130 Brassica oleracea Bo00703s130 I 0.803
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.803
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.803
Bra039779 Brassica rapa Bra039779 I 0.803
Bra029784 Brassica rapa Bra029784 I 0.803
Bo5g138130 Brassica oleracea Bo5g138130 I 0.788
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.788
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.781
mgf004062m Mimulus guttatus mgf004062m I 0.773
S1FA3 Arabidopsis thaliana AT3G09735 D 0.773
Bo3g061880 Brassica oleracea Bo3g061880 I 0.773
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.773
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.773
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.758
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.758
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.758
mgf000337m Mimulus guttatus mgf000337m I 0.758
29805.m001471 Ricinus communis 29805.m001471 I 0.758
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.742
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.742
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.742
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.742
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.742
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.742
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.742
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.727
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.727
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.727
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.727
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.727
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.727
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.727
Cla018106 Citrullus lanatus Cla018106 I 0.727
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.727
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.712
OB04G18780 Oryza brachyantha OB04G18780 I 0.712
OBART04G11660 Oryza barthii OBART04G11660 N 0.712
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.712
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.712
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.712
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.712
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.712
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.712
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.712
TCM_022113 Theobroma cacao TCM_022113 I 0.712
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.712
Pm002519 Prunus mume Pm002519 N 0.712
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.712
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.712
OS04G0408900 Oryza sativa OS04G0408900 N 0.712
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.712
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.712
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.712
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.712
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.712