Thhalv10010878m.g (Eutrema salsugineum)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Thhalv10010878m.g T321524_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10010878m S1FA 11 76

Links

Other S1FA family TFs
Other Eutrema salsugineum TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
S1FA1 Arabidopsis thaliana AT3G53370 I 0.939
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.939
Bra003132 Brassica rapa Bra003132 I 0.924
Bo6g067310 Brassica oleracea Bo6g067310 I 0.924
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.909
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.909
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.909
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.894
Bo00703s150 Brassica oleracea Bo00703s150 I 0.894
Bo00703s130 Brassica oleracea Bo00703s130 I 0.894
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.879
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.879
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.879
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.864
Bra039779 Brassica rapa Bra039779 I 0.864
Bra006994 Brassica rapa Bra006994 I 0.848
S1FA2 Arabidopsis thaliana AT2G37120 I 0.833
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.773
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.773
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.773
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.773
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.773
mgf000337m Mimulus guttatus mgf000337m I 0.758
Pm002519 Prunus mume Pm002519 N 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.758
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.758
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.758
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.758
Bra029784 Brassica rapa Bra029784 I 0.758
mgf004062m Mimulus guttatus mgf004062m I 0.742
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.742
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.742
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.742
Cla018106 Citrullus lanatus Cla018106 I 0.742
Bo5g138130 Brassica oleracea Bo5g138130 I 0.742
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.742
Bo3g061880 Brassica oleracea Bo3g061880 I 0.742
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.734
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.727
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.727
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.727
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.727
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.727
Bra034084 Brassica rapa Bra034084 I 0.727
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.727
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.727
TCM_022113 Theobroma cacao TCM_022113 I 0.727
29805.m001471 Ricinus communis 29805.m001471 I 0.727
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.727
Cla018556 Citrullus lanatus Cla018556 I 0.727
S1FA3 Arabidopsis thaliana AT3G09735 D 0.727
Bo1g144300 Brassica oleracea Bo1g144300 I 0.727
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.727
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.727
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.727
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.714
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.712
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.712
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.712
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.712
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
Si011030m.g Setaria italica Si011030m.g N 0.712
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.712
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.712
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.712
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.712
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.712
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.712