Gorai.009G419300 (Gossypium raimondii)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Gorai.009G419300 T321506_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.788 0.788
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G419300.1 S1FA 17 82

Links

Other S1FA family TFs
Other Gossypium raimondii TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.909
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.909
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.909
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.909
TCM_022113 Theobroma cacao TCM_022113 I 0.894
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.879
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.879
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.879
mgf000337m Mimulus guttatus mgf000337m I 0.879
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.879
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.879
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.864
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.864
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.864
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.864
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.864
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.864
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.864
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.864
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.848
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.848
Ca_12028 Cicer arietinum Ca_12028 I 0.848
Ca_12027 Cicer arietinum Ca_12027 I 0.848
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.848
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.833
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.833
Cla018556 Citrullus lanatus Cla018556 I 0.833
Cla018106 Citrullus lanatus Cla018106 I 0.833
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.833
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.833
29805.m001471 Ricinus communis 29805.m001471 I 0.818
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.818
mgf004062m Mimulus guttatus mgf004062m I 0.818
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.818
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.818
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.803
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.803
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.803
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.803
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.788
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.788
Bra029784 Brassica rapa Bra029784 I 0.788
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.788
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.788
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.788
Pm002519 Prunus mume Pm002519 N 0.788
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.788
S1FA3 Arabidopsis thaliana AT3G09735 D 0.788
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.773
Bra034084 Brassica rapa Bra034084 I 0.773
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.773
PK08477.1 Cannabis sativa PK08477.1 I 0.773
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.773
Bo1g144300 Brassica oleracea Bo1g144300 I 0.773
Bo5g138130 Brassica oleracea Bo5g138130 I 0.773
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.773
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.773
S1FA1 Arabidopsis thaliana AT3G53370 I 0.773
MDP0000276000 Malus domestica MDP0000276000 N 0.773
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.773
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.773
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.758
OB04G18770 Oryza brachyantha OB04G18770 I 0.758
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.758
Bo6g067310 Brassica oleracea Bo6g067310 I 0.758
Bo3g061880 Brassica oleracea Bo3g061880 I 0.758
Bra003132 Brassica rapa Bra003132 I 0.758
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.758
OB04G18780 Oryza brachyantha OB04G18780 I 0.758
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.758
S1FA2 Arabidopsis thaliana AT2G37120 I 0.758
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.758
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.742
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.742
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.742
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.742
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.742
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.742
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.742
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.742
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.742
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.742
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.742
S1FA2 Oryza sativa OS04G0408700 N 0.742
OS04G0408900 Oryza sativa OS04G0408900 N 0.742
OBART04G11650 Oryza barthii OBART04G11650 N 0.742
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.742
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.742
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.742
OBART04G11660 Oryza barthii OBART04G11660 N 0.742
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.742
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.742
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.742
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.727
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.727
Bra006994 Brassica rapa Bra006994 I 0.727
Bra039779 Brassica rapa Bra039779 I 0.727
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.727
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.727
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.727
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.727
Si011030m.g Setaria italica Si011030m.g N 0.727
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.727
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.727
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.727
Bo00703s150 Brassica oleracea Bo00703s150 I 0.712
Bo00703s130 Brassica oleracea Bo00703s130 I 0.712