Bra039779 (Brassica rapa)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 Bra039779 T321358_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039779.1-P S1FA 732 797

Links

Other S1FA family TFs
Other Brassica rapa TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00703s150 Brassica oleracea Bo00703s150 I 0.970
Bo00703s130 Brassica oleracea Bo00703s130 I 0.970
Bo6g067310 Brassica oleracea Bo6g067310 I 0.864
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.864
Bra003132 Brassica rapa Bra003132 I 0.864
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.848
Bra006994 Brassica rapa Bra006994 I 0.848
S1FA1 Arabidopsis thaliana AT3G53370 I 0.848
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.833
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.833
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.833
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.833
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.833
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.818
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.818
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.818
S1FA2 Arabidopsis thaliana AT2G37120 I 0.803
mgf004062m Mimulus guttatus mgf004062m I 0.773
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.773
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.758
mgf000337m Mimulus guttatus mgf000337m I 0.758
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.758
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.758
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.758
Bra029784 Brassica rapa Bra029784 I 0.758
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
Bra034084 Brassica rapa Bra034084 I 0.742
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.742
Bo3g061880 Brassica oleracea Bo3g061880 I 0.742
Bo1g144300 Brassica oleracea Bo1g144300 I 0.742
Bo5g138130 Brassica oleracea Bo5g138130 I 0.742
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.742
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.742
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.742
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.734
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.727
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.727
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.727
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.727
Cla018556 Citrullus lanatus Cla018556 I 0.727
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.727
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.727
S1FA3 Arabidopsis thaliana AT3G09735 D 0.727
Pm002519 Prunus mume Pm002519 N 0.727
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.714
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.712
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.712
Cla018106 Citrullus lanatus Cla018106 I 0.712
Si011030m.g Setaria italica Si011030m.g N 0.712
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.712