Thhalv10017496m.g (Eutrema salsugineum)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Thhalv10017496m.g T321525_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10017496m S1FA 11 76

Links

Other S1FA family TFs
Other Eutrema salsugineum TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.970
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.970
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.955
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.939
S1FA2 Arabidopsis thaliana AT2G37120 I 0.909
Bra003132 Brassica rapa Bra003132 I 0.894
Bo6g067310 Brassica oleracea Bo6g067310 I 0.894
S1FA1 Arabidopsis thaliana AT3G53370 I 0.879
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.879
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.879
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.864
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.848
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.848
Bra039779 Brassica rapa Bra039779 I 0.833
Bo00703s130 Brassica oleracea Bo00703s130 I 0.818
Bo00703s150 Brassica oleracea Bo00703s150 I 0.818
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.818
Bra006994 Brassica rapa Bra006994 I 0.818
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.818
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.803
mgf000337m Mimulus guttatus mgf000337m I 0.803
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.803
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.788
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.788
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.788
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.773
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.773
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.773
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.773
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.773
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.773
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.773
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.758
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.758
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.758
Cla018556 Citrullus lanatus Cla018556 I 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.758
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.758
29805.m001471 Ricinus communis 29805.m001471 I 0.758
Pm002519 Prunus mume Pm002519 N 0.758
mgf004062m Mimulus guttatus mgf004062m I 0.758
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.758
Bra029784 Brassica rapa Bra029784 I 0.758
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.758
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.758
Ca_12028 Cicer arietinum Ca_12028 I 0.742
Ca_12027 Cicer arietinum Ca_12027 I 0.742
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.742
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.742
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.742
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.742
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.742
Bra034084 Brassica rapa Bra034084 I 0.742
Bo5g138130 Brassica oleracea Bo5g138130 I 0.742
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.742
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.742
Bo1g144300 Brassica oleracea Bo1g144300 I 0.742
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.734
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.732
Bo3g061880 Brassica oleracea Bo3g061880 I 0.727
OBART04G11660 Oryza barthii OBART04G11660 N 0.727
OB04G18780 Oryza brachyantha OB04G18780 I 0.727
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.727
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.727
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.727
S1FA3 Arabidopsis thaliana AT3G09735 D 0.727
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.727
OS04G0408900 Oryza sativa OS04G0408900 N 0.727
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.727
Cla018106 Citrullus lanatus Cla018106 I 0.727
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.727
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.727
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.727
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.727
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.727
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.712
PK08477.1 Cannabis sativa PK08477.1 I 0.712
MDP0000276000 Malus domestica MDP0000276000 N 0.712
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.712
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.712
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.712
TCM_022113 Theobroma cacao TCM_022113 I 0.712
Si011030m.g Setaria italica Si011030m.g N 0.712
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.712
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.712
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.712
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.712
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.712
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.712
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.712
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.712