Pm017777 (Prunus mume)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pm017777 T323209_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW

WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.974 0.907
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN

NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.912 0.800
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN

NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.909 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm017777 SBP 147 221

Links

Other SBP family TFs
Other Prunus mume TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.987
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.983
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.979
PK25779.1 Cannabis sativa PK25779.1 I 0.979
Ca_18942 Cicer arietinum Ca_18942 I 0.979
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.979
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.979
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.979
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.978
30174.m008803 Ricinus communis 30174.m008803 I 0.978
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.978
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.978
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.978
TCM_005622 Theobroma cacao TCM_005622 I 0.978
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.978
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.978
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.978
Cla006776 Citrullus lanatus Cla006776 I 0.978
mgf016085m Mimulus guttatus mgf016085m I 0.978
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.978
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.978
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.978
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.978
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.978
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.978
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.978
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.978
MDP0000803116 Malus domestica MDP0000803116 I 0.978
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.978
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.975
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.974
Bra033221 Brassica rapa Bra033221 I 0.974
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.974
Bra032662 Brassica rapa Bra032662 I 0.974
Bo5g001290 Brassica oleracea Bo5g001290 I 0.974
SPL8 Arabidopsis thaliana AT1G02065 D 0.974
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.974
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.974
Bo8g118210 Brassica oleracea Bo8g118210 I 0.974
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.974
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.974
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.969
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.966
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.956
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.942
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.938
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.937
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.935
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.934
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.931
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.931
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.931
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.925
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.922
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.920
MDP0000158607 Malus domestica MDP0000158607 I 0.917
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.915
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.915
Ca_16243 Cicer arietinum Ca_16243 I 0.915
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.913
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.913
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.913
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.912
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.912
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.912
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.912
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.912
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.912
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.909
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.909
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.908
Pm011381 Prunus mume Pm011381 I 0.906
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.906
Cla023735 Citrullus lanatus Cla023735 I 0.903
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.902
MDP0000861601 Malus domestica MDP0000861601 I 0.901
MDP0000156994 Malus domestica MDP0000156994 I 0.901
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.900
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.900
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.900
SPL5 Oryza sativa OS02G0177300 I 0.900
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.898
Cla009788 Citrullus lanatus Cla009788 I 0.898
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.896
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.896
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.896
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.896
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.895
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.894
PK26639.1 Cannabis sativa PK26639.1 I 0.894
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.892
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.890
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.890
OBART04G27990 Oryza barthii OBART04G27990 I 0.890
OB04G34990 Oryza brachyantha OB04G34990 I 0.890
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.890
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.890
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.890
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.890
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.890
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.890
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.890
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.890
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.890
Si017338m.g Setaria italica Si017338m.g I 0.890
Si022315m.g Setaria italica Si022315m.g I 0.890
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.890
SPL8 Oryza sativa OS04G0656500 I 0.890
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.890
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.890
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.890
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.890
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.890
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.890
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.887