MTR_8g005960 (Medicago truncatula)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 MTR_8g005960 T322744_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.985 0.947
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.943 0.827
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.937 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AET01169 SBP 187 261

Links

Other SBP family TFs
Other Medicago truncatula TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_18942 Cicer arietinum Ca_18942 I 0.987
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.987
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.987
PK25779.1 Cannabis sativa PK25779.1 I 0.987
TCM_005622 Theobroma cacao TCM_005622 I 0.986
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.986
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.986
Cla006776 Citrullus lanatus Cla006776 I 0.986
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.986
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.986
30174.m008803 Ricinus communis 30174.m008803 I 0.986
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.986
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.986
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.986
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.986
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.986
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.986
mgf016085m Mimulus guttatus mgf016085m I 0.986
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.986
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.986
Bo8g118210 Brassica oleracea Bo8g118210 I 0.985
MDP0000803116 Malus domestica MDP0000803116 I 0.985
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.985
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.985
Bo5g001290 Brassica oleracea Bo5g001290 I 0.985
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.985
Bra032662 Brassica rapa Bra032662 I 0.985
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.985
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.985
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.985
SPL8 Arabidopsis thaliana AT1G02065 D 0.985
Bra033221 Brassica rapa Bra033221 I 0.985
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.985
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.984
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.984
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.984
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.984
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.983
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.982
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.978
Pm017777 Prunus mume Pm017777 I 0.978
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.978
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.976
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.960
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.959
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.958
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.958
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.957
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.953
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.951
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.948
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.948
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.946
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.946
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.944
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.943
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.941
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.937
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.936
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.936
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.934
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.933
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.933
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.933
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.933
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.930
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.930
SPL5 Oryza sativa OS02G0177300 I 0.930
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.930
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.929
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.929
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.929
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.929
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.929
OB04G34990 Oryza brachyantha OB04G34990 I 0.929
OBART04G27990 Oryza barthii OBART04G27990 I 0.929
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.929
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.929
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.929
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.929
Si017338m.g Setaria italica Si017338m.g I 0.929
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.929
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.929
SPL8 Oryza sativa OS04G0656500 I 0.929
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.929
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.929
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.929
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.929
Si022315m.g Setaria italica Si022315m.g I 0.929
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.929
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.929
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.927
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.924
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.922
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.918
OB02G15090 Oryza brachyantha OB02G15090 I 0.918
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.917
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.914
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.914
SPL10 Oryza indica BGIOSGA023408 I 0.914
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.914
MLOC_326 Hordeum vulgare MLOC_326 I 0.914
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.914
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.914
SPL10 Oryza sativa OS06G0659100 I 0.914
Si006559m.g Setaria italica Si006559m.g I 0.914
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.914
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.914
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.914
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.914
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.914
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.914
OB06G31100 Oryza brachyantha OB06G31100 I 0.914
Cla020006 Citrullus lanatus Cla020006 I 0.910
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.910
AMTR_s00106p00144050 Amborella trichopoda AMTR_s00106p00144050 I 0.909
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.908
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.907
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.907
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.907
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.905
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.904
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.900
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.887