Gorai.008G213900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.008G213900 T008623_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.783 0.898
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.748 0.796
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.739 0.837
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.739 0.837
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.738 0.755
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.738 0.755
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.738 0.755
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.736 0.776
ERF6
M01621_2.00 		Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN		 PBM
Weirauch et al.(2014)
pTH7228 		0.734 0.755
ERF6
M06637_2.00 		Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF6_col 		0.734 0.755
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.732 0.776
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.731 0.796
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.722 0.714
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.722 0.714
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.722 0.816
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.722 0.816
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.722 0.816
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.722 0.776
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.715 0.735
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.715 0.735
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.715 0.735
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.713 0.776
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.713 0.776
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.713 0.776
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.713 0.776
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.713 0.776
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.708 0.694
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.708 0.694
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.708 0.714
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.707 0.694
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.706 0.673
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.706 0.673
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.700 0.755
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.700 0.755
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.700 0.755
OS05G0497200
M01636_2.00 		Oryza sativa
CGSCGCCR
YGGCGSCG		 PBM
Weirauch et al.(2014)
pTH8640 		0.698 0.694
ERF15
M00718_2.00 		Arabidopsis thaliana
NGSCGSCB
VGSCGSCN		 PBM
Chang et al.(2013)
pTH7336 		0.697 0.755
ERF15
M06604_2.00 		Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF15_colamp_a 		0.697 0.755
ERF15
M06605_2.00 		Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN		 Dap-seq
OMalley et al.(2016)
ERF15_col 		0.697 0.755
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.697 0.837
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.691 0.653
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.690 0.735
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.690 0.735
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.686 0.714
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.682 0.714
Q84J59_MAIZE
M09717_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BD1_01 		0.681 0.633
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.678 0.673
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.678 0.673
ERF086
M06663_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYHD
HDRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
PUCHI_col_a 		0.677 0.653
ERF086
M06664_2.00 		Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN
NNNDHDDHDRCGGCGGMGDHDNNNN		 Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a 		0.677 0.653
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G213900.1 AP2 133 185

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

1266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29822.m003500 Ricinus communis 29822.m003500 I
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I
ATHB-7 Arabidopsis thaliana AT2G46680 D
ATHB-12 Arabidopsis thaliana AT3G61890 D
HAT7 Arabidopsis thaliana AT5G15150 I
ATHB-52 Arabidopsis thaliana AT5G53980 I
Bo2g012410 Brassica oleracea Bo2g012410 I
Bo2g042250 Brassica oleracea Bo2g042250 I
Bo3g010120 Brassica oleracea Bo3g010120 I
Bo4g007060 Brassica oleracea Bo4g007060 I
Bo4g100070 Brassica oleracea Bo4g100070 I
Bo9g165360 Brassica oleracea Bo9g165360 I
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I
Bostr.25993s0098 Boechera stricta Bostr.25993s0098 I
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I
Bra004516 Brassica rapa Bra004516 I
Bra006285 Brassica rapa Bra006285 I
Bra007637 Brassica rapa Bra007637 I
Bra008717 Brassica rapa Bra008717 I
Bra014417 Brassica rapa Bra014417 I
Bra022687 Brassica rapa Bra022687 I
Bra023506 Brassica rapa Bra023506 I
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I
Cagra.0050s0032 Capsella grandiflora Cagra.0050s0032 I
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I
Carubv10001498m.g Capsella rubella Carubv10001498m.g I
Carubv10017952m.g Capsella rubella Carubv10017952m.g I
Carubv10023896m.g Capsella rubella Carubv10023896m.g I
Carubv10027280m.g Capsella rubella Carubv10027280m.g I
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I
cassava39955.m1 Manihot esculenta cassava39955.m1 I
Ca_10527 Cicer arietinum Ca_10527 I
Ca_17608 Cicer arietinum Ca_17608 I
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I
Cla010510 Citrullus lanatus Cla010510 I
Cla018641 Citrullus lanatus Cla018641 I
Cucsa.125070 Cucumis sativus Cucsa.125070 I
Cucsa.158420 Cucumis sativus Cucsa.158420 I
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I
GLYMA06G35050 Glycine max GLYMA06G35050 I
GLYMA09G37410 Glycine max GLYMA09G37410 I
GLYMA12G18720 Glycine max GLYMA12G18720 I
GLYMA18G49290 Glycine max GLYMA18G49290 I
GLYMA19G02490 Glycine max GLYMA19G02490 I
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I
GRMZM2G034113 Zea mays GRMZM2G034113 I
GRMZM2G041462 Zea mays GRMZM2G041462 I
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I
MDP0000124827 Malus domestica MDP0000124827 I
MDP0000146339 Malus domestica MDP0000146339 I
MDP0000311522 Malus domestica MDP0000311522 I
MDP0000316497 Malus domestica MDP0000316497 I
MDP0000737128 Malus domestica MDP0000737128 I
MTR_1g061660 Medicago truncatula MTR_1g061660 I
MTR_6g011610 Medicago truncatula MTR_6g011610 I
MTR_8g026960 Medicago truncatula MTR_8g026960 I
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I
PK03912.1 Cannabis sativa PK03912.1 I
PK20392.1 Cannabis sativa PK20392.1 D
Pm011328 Prunus mume Pm011328 I
Pm015861 Prunus mume Pm015861 I
Pm018314 Prunus mume Pm018314 I
Pm019693 Prunus mume Pm019693 I
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I
PRUPE_ppa011221mg Prunus persica PRUPE_ppa011221mg I
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I
Q39944_HELAN Helianthus annuus Q39944_HELAN D
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I
Sb02g030660 Sorghum bicolor Sb02g030660 I
scaffold_403638.1 Arabidopsis lyrata scaffold_403638.1 I
scaffold_403640.1 Arabidopsis lyrata scaffold_403640.1 I
Si030983m.g Setaria italica Si030983m.g I
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I
TCM_018470 Theobroma cacao TCM_018470 I
TCM_031644 Theobroma cacao TCM_031644 I
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I