Carubv10023656m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10023656m.g T022895_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023656m B3 43 149

Links

Other B3 family TFs
Other Capsella rubella TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30032.m000462 Ricinus communis 30032.m000462 N 0.713
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.703
ARF31 Arabidopsis thaliana AT2G36080 N 0.713
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.713
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.762
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.832
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.000
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.000
Bo01079s020 Brassica oleracea Bo01079s020 N 0.703
Bo3g003800 Brassica oleracea Bo3g003800 N 0.703
Bo3g064320 Brassica oleracea Bo3g064320 N 0.713
Bo4g035110 Brassica oleracea Bo4g035110 N 0.000
Bo5g136360 Brassica oleracea Bo5g136360 N 0.723
Bo9g176470 Brassica oleracea Bo9g176470 N 0.733
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.752
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.713
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.703
Bra001411 Brassica rapa Bra001411 N 0.703
Bra005301 Brassica rapa Bra005301 N 0.000
Bra005886 Brassica rapa Bra005886 N 0.703
Bra017262 Brassica rapa Bra017262 N 0.703
Bra034828 Brassica rapa Bra034828 N 0.723
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.000
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.000
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.703
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.713
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.772
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.772
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.713
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.703
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.703
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.000
Ca_00826 Cicer arietinum Ca_00826 N 0.713
Ca_25633 Cicer arietinum Ca_25633 I 0.717
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.717
Cla017937 Citrullus lanatus Cla017937 I 0.000
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.000
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.000
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.723
F775_02500 Aegilops tauschii F775_02500 N 0.000
F775_31255 Aegilops tauschii F775_31255 N 0.000
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.762
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.707
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.733
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.000
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.713
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.000
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.713
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.000
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.713
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.737
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.000
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.700
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.000
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.703
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.000
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.000
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.000
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.842
LPERR11G03050 Leersia perrieri LPERR11G03050 N 0.000
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.000
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.703
MDP0000229742 Malus domestica MDP0000229742 N 0.000
MDP0000288808 Malus domestica MDP0000288808 N 0.792
mgf018965m Mimulus guttatus mgf018965m N 0.000
mgf019085m Mimulus guttatus mgf019085m N 0.723
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.000
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.000
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.703
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.733
OB03G11610 Oryza brachyantha OB03G11610 N 0.842
OB10G24100 Oryza brachyantha OB10G24100 N 0.744
OB11G12920 Oryza brachyantha OB11G12920 N 0.000
OB12G13420 Oryza brachyantha OB12G13420 N 0.713
OBART03G01650 Oryza barthii OBART03G01650 N 0.832
OBART11G03590 Oryza barthii OBART11G03590 N 0.000
OBART12G03490 Oryza barthii OBART12G03490 N 0.000
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.832
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.000
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.000
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.000
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.832
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.000
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.703
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.832
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.000
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.000
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.832
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.000
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.703
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.717
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.832
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.000
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.000
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.000
OS03G0120900 Oryza sativa OS03G0120900 N 0.832
OS11G0156000 Oryza sativa OS11G0156000 N 0.000
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.000
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.000
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.000
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.000
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.768
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.000
PK04952.1 Cannabis sativa PK04952.1 I 0.707
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.871
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.000
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.871
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.703
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.717
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.881
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.871
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.703
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.000
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.703
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.000
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.000
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.713
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.703
Si010849m.g Setaria italica Si010849m.g N 0.000
Si027632m.g Setaria italica Si027632m.g N 0.703
Si039972m.g Setaria italica Si039972m.g N 0.733
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.000
TCM_022729 Theobroma cacao TCM_022729 N 0.727
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.743
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.703
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.703
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.741
Traes_2AL_25382F498 Triticum aestivum Traes_2AL_25382F498 N 0.000
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.809
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.000
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.000
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.857
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.000
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.000
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.000
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.000
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.000
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.757
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.733