Pavir.J29765 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J29765 T028625_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J29765.1.p BED ZF 28 74

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30106.m000672 Ricinus communis 30106.m000672 I
FHY3 Arabidopsis thaliana AT3G22170 D
Bo1g105420 Brassica oleracea Bo1g105420 I
Bo5g098280 Brassica oleracea Bo5g098280 I
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I
Bra031330 Brassica rapa Bra031330 I
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I
Carubv10013009m.g Capsella rubella Carubv10013009m.g I
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I
Cucsa.180080 Cucumis sativus Cucsa.180080 I
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I
GLYMA04G14850 Glycine max GLYMA04G14850 I
GLYMA06G47210 Glycine max GLYMA06G47210 I
GLYMA10G40510 Glycine max GLYMA10G40510 I
GLYMA20G26810 Glycine max GLYMA20G26810 I
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I
MDP0000286803 Malus domestica MDP0000286803 I
mgf008053m Mimulus guttatus mgf008053m I
mgf009829m Mimulus guttatus mgf009829m I
mgf014333m Mimulus guttatus mgf014333m I
PK04639.1 Cannabis sativa PK04639.1 I
PK08903.1 Cannabis sativa PK08903.1 I
Pm014858 Prunus mume Pm014858 I
Pm014859 Prunus mume Pm014859 I
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I
TCM_002030 Theobroma cacao TCM_002030 I
TCM_013043 Theobroma cacao TCM_013043 I
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I
FAR1 Vitis vinifera VIT_03s0017g01810 I