chr3.CM1144.10.nc (Lotus japonicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 chr3.CM1144.10.nc T146057_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM1144.10.nc C2H2 ZF 168 190
chr3.CM1144.10.nc C2H2 ZF 189 215

Links

Other C2H2 ZF family TFs
Other Lotus japonicus TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000651 Ricinus communis 27810.m000651 N 0.766
30055.m001542 Ricinus communis 30055.m001542 N 0.821
30061.m000294 Ricinus communis 30061.m000294 N 0.796
30169.m006417 Ricinus communis 30169.m006417 N 0.782
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.766
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N
WIP6 Arabidopsis thaliana AT1G13290 N
WIP2 Arabidopsis thaliana AT3G57670 N 0.766
BGIOSGA030081 Oryza indica BGIOSGA030081 N
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.761
Bo4g111000 Brassica oleracea Bo4g111000 N 0.766
Bo5g015200 Brassica oleracea Bo5g015200 N
Bo6g073120 Brassica oleracea Bo6g073120 N 0.766
Bo8g092070 Brassica oleracea Bo8g092070 N 0.766
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.766
Bra003295 Brassica rapa Bra003295 N 0.766
Bra007346 Brassica rapa Bra007346 N 0.764
Bra014612 Brassica rapa Bra014612 N 0.766
Bra019822 Brassica rapa Bra019822 N
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.761
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.766
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N
Carubv10012013m.g Capsella rubella Carubv10012013m.g N
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.766
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.821
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.815
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.776
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.766
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.796
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.766
cassava46219.m1 Manihot esculenta cassava46219.m1 N
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.776
Ca_07269 Cicer arietinum Ca_07269 N 0.766
Ca_08435 Cicer arietinum Ca_08435 N
Ca_21713 Cicer arietinum Ca_21713 N 0.776
Ca_24699 Cicer arietinum Ca_24699 N
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.766
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.766
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.772
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.821
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.761
Cla002714 Citrullus lanatus Cla002714 N
Cla008187 Citrullus lanatus Cla008187 N 0.766
Cla008675 Citrullus lanatus Cla008675 N
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.766
Cucsa.248320 Cucumis sativus Cucsa.248320 N
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.766
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.766
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.821
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.776
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.821
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.766
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.782
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.766
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.761
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.766
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.772
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.815
GLYMA01G22120 Glycine max GLYMA01G22120 N
GLYMA02G10970 Glycine max GLYMA02G10970 N
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.766
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.796
GLYMA10G34770 Glycine max GLYMA10G34770 N
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.821
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.821
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.821
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.796
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.796
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.821
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.796
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.766
GLYMA20G32750 Glycine max GLYMA20G32750 N
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.821
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.766
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.766
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.821
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.772
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.776
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.776
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.761
GRMZM2G435357 Zea mays GRMZM2G435357 N
GRMZM2G436344 Zea mays GRMZM2G436344 N
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.796
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.776
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.782
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.761
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.796
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.766
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.772
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.782
LPERR06G17470 Leersia perrieri LPERR06G17470 N
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.761
Lus10021700.g Linum usitatissimum Lus10021700.g N
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.791
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.791
Lus10035044.g Linum usitatissimum Lus10035044.g N
MDP0000131949 Malus domestica MDP0000131949 N 0.821
MDP0000300013 Malus domestica MDP0000300013 N 0.821
MDP0000303483 Malus domestica MDP0000303483 N
MDP0000403797 Malus domestica MDP0000403797 N 0.772
MDP0000580545 Malus domestica MDP0000580545 N 0.772
MDP0000601705 Malus domestica MDP0000601705 N 0.766
MDP0000899280 Malus domestica MDP0000899280 N
mgf019910m Mimulus guttatus mgf019910m N
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.761
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.776
MTR_1g093095 Medicago truncatula MTR_1g093095 N
OB06G28740 Oryza brachyantha OB06G28740 N
OBART06G20890 Oryza barthii OBART06G20890 N 0.776
OBART09G03640 Oryza barthii OBART09G03640 N
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.761
OMERI09G02890 Oryza meridionalis OMERI09G02890 N
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.761
ONIVA02G14580 Oryza nivara ONIVA02G14580 N
ONIVA06G24670 Oryza nivara ONIVA06G24670 N
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.761
OPUNC06G19020 Oryza punctata OPUNC06G19020 N
OPUNC09G03280 Oryza punctata OPUNC09G03280 N
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.761
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.772
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.821
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.766
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.761
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.761
OS02G0196100 Oryza sativa OS02G0196100 N
OS06G0612300 Oryza sativa OS06G0612300 N
OS09G0307400 Oryza sativa OS09G0307400 N 0.761
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.761
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.772
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.766
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N
PK03705.1 Cannabis sativa PK03705.1 N 0.766
Pm000471 Prunus mume Pm000471 N 0.772
Pm001374 Prunus mume Pm001374 N 0.821
Pm025853 Prunus mume Pm025853 N 0.766
Pm029018 Prunus mume Pm029018 N
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.796
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.782
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.821
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.796
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.821
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.766
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.766
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.821
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.772
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.782
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.766
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.821
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.761
Sb10g024040 Sorghum bicolor Sb10g024040 N
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.776
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.776
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N
Si006616m.g Setaria italica Si006616m.g N
Si030360m.g Setaria italica Si030360m.g N 0.761
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.772
TCM_005892 Theobroma cacao TCM_005892 N 0.796
TCM_011858 Theobroma cacao TCM_011858 N
TCM_024788 Theobroma cacao TCM_024788 N 0.766
TCM_040610 Theobroma cacao TCM_040610 N 0.782
TCM_041441 Theobroma cacao TCM_041441 N 0.821
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.766
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.761
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.761
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.776
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.776
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.761
DOT5 Vitis vinifera VIT_01s0011g03100 N
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.821
NTT Vitis vinifera VIT_08s0007g08070 N 0.766