Cagra.6016s0001 (Capsella grandiflora)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04873 (EIN3) IPR006957 Cagra.6016s0001 T175328_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EIL1
M00724_2.00 		Arabidopsis thaliana
NNVRTDMRN
NYKHAYBNN		 PBM
Chang et al.(2013)
pTH7932 		0.980 0.980
EIN3
M00725_2.00 		Arabidopsis thaliana
NNRTDHAYNN
NNRTDHAYNN		 PBM
Chang et al.(2013)
pTH8729 		0.903 0.903
EIN3
M06878_2.00 		Arabidopsis thaliana
GDMYANRTWCAWTGH
DCAWTGWAYNTRKHC		 Dap-seq
OMalley et al.(2016)
EIN3_col_a 		0.903 0.903
EIN3
M06879_2.00 		Arabidopsis thaliana
RCCGTTR
YAACGGY		 Dap-seq
OMalley et al.(2016)
EIN3_colamp_a 		0.903 0.903
Q9ZWK1_TOBAC
M10470_2.00 		Nicotiana tabacum
AGRTWCAT
ATGWAYCT		 Transfac
Matys et al.(2006)
P$TEIL_01 		0.895 0.895
e_gw1.87.73.1
M00726_2.00 		Physcomitrella patens
NNNRTDCDBN
NVHGHAYNNN		 PBM
Chang et al.(2013)
pTH8479 		0.827 0.827
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6016s0001.1.p EIN3 49 299

Links

Other EIN3 family TFs
Other Capsella grandiflora TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29708.m000185 Ricinus communis 29708.m000185 I 0.899
30169.m006395 Ricinus communis 30169.m006395 I 0.702
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.714
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.835
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.874
EIL1 Arabidopsis thaliana AT2G27050 D 0.984
EIN3 Arabidopsis thaliana AT3G20770 D 0.903
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.793
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.782
Bo1g108650 Brassica oleracea Bo1g108650 I 0.869
Bo3g041690 Brassica oleracea Bo3g041690 I 0.915
Bo3g076180 Brassica oleracea Bo3g076180 I 0.843
Bo5g106280 Brassica oleracea Bo5g106280 I 0.911
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.911
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.968
Bra000528 Brassica rapa Bra000528 I 0.923
Bra001802 Brassica rapa Bra001802 I 0.839
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.806
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.911
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.911
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 1.000
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.704
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.902
Ca_02669 Cicer arietinum Ca_02669 I 0.700
Ca_07534 Cicer arietinum Ca_07534 I 0.874
Ca_10236 Cicer arietinum Ca_10236 I 0.875
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.887
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.713
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.862
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.870
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.891
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.704
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.890
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.866
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.709
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.851
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.902
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.895
evm.TU.supercontig_54.30 Carica papaya evm.TU.supercontig_54.30 I 0.778
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.819
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.833
F775_28545 Aegilops tauschii F775_28545 I 0.797
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.898
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.984
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.858
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.704
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.879
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.886
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.879
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.891
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.729
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.898
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.713
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.898
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.902
Gorai.004G035300 Gossypium raimondii Gorai.004G035300 I 0.702
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.883
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.891
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.883
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.730
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.785
GRMZM2G151811 Zea mays GRMZM2G151811 I 0.761
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.785
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.831
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.749
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.819
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I 0.751
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.831
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.823
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.815
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.785
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.806
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.738
MDP0000202831 Malus domestica MDP0000202831 I 0.870
MDP0000212881 Malus domestica MDP0000212881 I 0.858
MDP0000306498 Malus domestica MDP0000306498 I 0.847
MDP0000490180 Malus domestica MDP0000490180 I 0.702
MDP0000562585 Malus domestica MDP0000562585 I 0.706
MDP0000564884 Malus domestica MDP0000564884 I 0.858
MDP0000565880 Malus domestica MDP0000565880 I 0.706
mgf012394m Mimulus guttatus mgf012394m I 0.810
mgf015996m Mimulus guttatus mgf015996m I 0.849
mgf018950m Mimulus guttatus mgf018950m I 0.849
mgf020935m Mimulus guttatus mgf020935m I 0.700
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.797
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.718
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.870
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.887
OB07G32250 Oryza brachyantha OB07G32250 I 0.700
OBART07G26760 Oryza barthii OBART07G26760 I 0.757
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.793
OLONG_004360 Oryza longistaminata OLONG_004360 I 0.762
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.793
OMERI05G02190 Oryza meridionalis OMERI05G02190 I 0.727
OMERI07G23380 Oryza meridionalis OMERI07G23380 I 0.769
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.793
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.782
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.793
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.777
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.891
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.870
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.704
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.862
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.793
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.782
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.793
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.782
OS03G0324200 Oryza sativa OS03G0324200 I 0.793
OS03G0324300 Oryza sativa OS03G0324300 I 0.793
OS07G0685700 Oryza sativa OS07G0685700 I 0.782
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I 0.746
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.789
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.790
Pavir.J01001 Panicum virgatum Pavir.J01001 I 0.726
PDK_20s1443543g001 Phoenix dactylifera PDK_20s1443543g001 I 0.798
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.890
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.882
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.907
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.851
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.709
PK01239.1 Cannabis sativa PK01239.1 I 0.863
PK13351.1 Cannabis sativa PK13351.1 I 0.863
PK19114.1 Cannabis sativa PK19114.1 I 0.714
Pm017009 Prunus mume Pm017009 I 0.870
Pm028171 Prunus mume Pm028171 I 0.707
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.717
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.902
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.866
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.898
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.862
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.706
PRUPE_ppa003493mg Prunus persica PRUPE_ppa003493mg I 0.798
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.859
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.899
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.862
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.871
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.879
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.894
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.710
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.793
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.730
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.805
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.805
SELMODRAFT_16064 Selaginella moellendorffii SELMODRAFT_16064 I 0.710
SELMODRAFT_16065 Selaginella moellendorffii SELMODRAFT_16065 I 0.710
SELMODRAFT_449238 Selaginella moellendorffii SELMODRAFT_449238 I 0.809
Si029213m.g Setaria italica Si029213m.g I 0.753
Si034616m.g Setaria italica Si034616m.g I 0.781
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.915
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.706
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.850
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.882
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.887
TCM_042022 Theobroma cacao TCM_042022 I 0.911
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.968
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.906
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I 0.713
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.797
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I 0.833
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.802
Traes_5DL_62DEF8361 Triticum aestivum Traes_5DL_62DEF8361 I 0.709
TRIUR3_30860 Triticum urartu TRIUR3_30860 I 0.711
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.702
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.851
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.870