Bo4g142080 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo4g142080 T204920_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.832 0.702
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.632 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.600 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.600 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.600 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.600 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g142080.1 Homeodomain 389 438

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

998 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013896 Aedes aegypti AAEL013896 I 0.000
AAH84196 Xenopus laevis AAH84196 I 0.000
AALB009485 Anopheles albimanus AALB009485 I 0.000
Aan_R014474 Calypte anna Aan_R014474 I 0.000
AARA004719 Anopheles arabiensis AARA004719 I 0.000
AATE010695 Anopheles atroparvus AATE010695 I 0.000
ACEP19585 Atta cephalotes ACEP19585 I 0.000
ACHR000067 Anopheles christyi ACHR000067 I 0.000
ACOM037505 Anopheles coluzzii ACOM037505 I 0.000
ACUA025512 Anopheles culicifacies ACUA025512 I 0.000
ACYPI000365 Acyrthosiphon pisum ACYPI000365 I 0.000
ACYPI003759 Acyrthosiphon pisum ACYPI003759 I 0.000
ACYPI005550 Acyrthosiphon pisum ACYPI005550 I 0.000
ACYPI008450 Acyrthosiphon pisum ACYPI008450 I 0.000
ADAC007516 Anopheles darlingi ADAC007516 I 0.000
ADIR002761 Anopheles dirus ADIR002761 I 0.000
AEPI002385 Anopheles epiroticus AEPI002385 I 0.000
AFAF011208 Anopheles farauti AFAF011208 I 0.000
Afo_R008709 Aptenodytes forsteri Afo_R008709 I 0.000
AFUN009864 Anopheles funestus AFUN009864 I 0.000
AGAP002902 Anopheles gambiae AGAP002902 I 0.000
Alligator_sinensis_CCG001823.1 Alligator sinensis Alligator_sinensis_CCG001823.1 I 0.000
Alligator_sinensis_CCG008910.1 Alligator sinensis Alligator_sinensis_CCG008910.1 I 0.000
AMAM019778 Anopheles maculatus AMAM019778 I 0.000
AMEM015931 Anopheles merus AMEM015931 I 0.000
AMIN000723 Anopheles minimus AMIN000723 I 0.000
ANCCAN_20978 Ancylostoma caninum ANCCAN_20978 I 0.000
Aqu1.215833 Amphimedon queenslandica Aqu1.215833 I 0.000
Aqu1.215834 Amphimedon queenslandica Aqu1.215834 I 0.000
Aqu1.229767 Amphimedon queenslandica Aqu1.229767 I 0.000
AQUA009305 Anopheles quadriannulatus AQUA009305 I 0.000
ASIM_0001604001 Anisakis simplex ASIM_0001604001 I 0.000
ASTEI00079 Anopheles stephensi ASTEI00079 I 0.000
ASU_13433 Ascaris suum ASU_13433 I 0.000
BGIBMGA010110 Bombyx mori BGIBMGA010110 I 0.000
BGLB014287 Biomphalaria glabrata BGLB014287 I 0.000
Bm3575 Brugia malayi Bm3575 I 0.000
Brh_R010414 Buceros rhinoceros Brh_R010414 I 0.000
BTMF_0000404601 Brugia timori BTMF_0000404601 I 0.000
CapteG179368 Capitella teleta CapteG179368 I 0.000
CBN31444 Caenorhabditis brenneri CBN31444 I 0.000
Cflo_07183--XP_392838.3_APIME Camponotus floridanus Cflo_07183--XP_392838.3_APIME I 0.000
CGI_10000594 Crassostrea gigas CGI_10000594 I 0.000
CLEC002594 Cimex lectularius CLEC002594 I 0.000
Cmyd_10005540 Chelonia mydas Cmyd_10005540 I 0.000
CPIJ002563 Culex quinquefasciatus CPIJ002563 I 0.000
CpipJ_CPIJ002563 Culex pipiens CpipJ_CPIJ002563 I 0.000
D915_03789 Fasciola hepatica D915_03789 I 0.000
D917_09719 Trichinella nativa D917_09719 I 0.000
DAPPUDRAFT_304115 Daphnia pulex DAPPUDRAFT_304115 I 0.000
ECPE_0001832001 Echinostoma caproni ECPE_0001832001 I 0.000
EEL_0000707501 Elaeophora elaphi EEL_0000707501 I 0.000
EFV62078 Trichinella spiralis EFV62078 I 0.000
SMAD4 Anolis carolinensis ENSACAG00000010186 I 0.000
ENSAMEG00000002899 Ailuropoda melanoleuca ENSAMEG00000002899 I 0.000
ENSAMXG00000017275 Astyanax mexicanus ENSAMXG00000017275 I 0.000
ENSAMXG00000018339 Astyanax mexicanus ENSAMXG00000018339 I 0.000
ENSAMXG00000019219 Astyanax mexicanus ENSAMXG00000019219 I 0.000
ENSAPLG00000003924 Anas platyrhynchos ENSAPLG00000003924 I 0.000
SMAD4 Bos taurus ENSBTAG00000006919 I 0.000
SMAD4 Canis familiaris ENSCAFG00000000164 I 0.000
SMAD4 Choloepus hoffmanni ENSCHOG00000000860 I 0.000
smad4 Ciona intestinalis ENSCING00000005559 I 0.000
SMAD4 Callithrix jacchus ENSCJAG00000001910 I 0.000
SMAD4 Cavia porcellus ENSCPOG00000006470 I 0.000
ENSCSAG00000018094 Chlorocebus sabaeus ENSCSAG00000018094 I 0.000
ENSCSAVG00000006480 Ciona savignyi ENSCSAVG00000006480 I 0.000
SMAD4 Danio rerio ENSDARG00000012649 I 0.000
si:dkey-222b8.1 Danio rerio ENSDARG00000045094 I 0.000
si:dkey-239n17.4 Danio rerio ENSDARG00000070428 I 0.000
smad4a Danio rerio ENSDARG00000075226 I 0.000
SMAD4 Dasypus novemcinctus ENSDNOG00000005063 I 0.000
Smad4 Dipodomys ordii ENSDORG00000009089 I 0.000
SMAD4 Equus caballus ENSECAG00000017857 I 0.000
SMAD4 Echinops telfairi ENSETEG00000007750 I 0.000
SMAD4 Felis catus ENSFCAG00000005257 I 0.000
SMAD4 Homo sapiens ENSG00000141646 D 0.000
si:dkey-222b8.1 Gasterosteus aculeatus ENSGACG00000000538 I 0.000
ENSGACG00000003171 Gasterosteus aculeatus ENSGACG00000003171 I 0.000
smad4a Gasterosteus aculeatus ENSGACG00000007495 I 0.000
ENSGACG00000016858 Gasterosteus aculeatus ENSGACG00000016858 I 0.000
SMAD4 Gorilla gorilla ENSGGOG00000013662 I 0.000
ENSGMOG00000000297 Gadus morhua ENSGMOG00000000297 I 0.000
ENSGMOG00000005844 Gadus morhua ENSGMOG00000005844 I 0.000
ENSGMOG00000013964 Gadus morhua ENSGMOG00000013964 I 0.000
ENSLACG00000007810 Latimeria chalumnae ENSLACG00000007810 I 0.000
SMAD4 Loxodonta africana ENSLAFG00000012595 I 0.000
ENSLOCG00000012872 Lepisosteus oculatus ENSLOCG00000012872 I 0.000
ENSMEUG00000001823 Macropus eugenii ENSMEUG00000001823 I 0.000
SMAD4 Myotis lucifugus ENSMLUG00000013944 I 0.000
SMAD4 Macaca mulatta ENSMMUG00000018334 I 0.000
SMAD4 Monodelphis domestica ENSMODG00000010995 I 0.000
ENSMPUG00000008776 Mustela putorius furo ENSMPUG00000008776 I 0.000
Smad4 Mus musculus ENSMUSG00000024515 D 0.000
ENSNLEG00000011859 Nomascus leucogenys ENSNLEG00000011859 I 0.000
SMAD4 Ornithorhynchus anatinus ENSOANG00000008117 I 0.000
ENSOANG00000030959 Ornithorhynchus anatinus ENSOANG00000030959 I 0.000
ENSOARG00000004662 Ovis aries ENSOARG00000004662 I 0.000
SMAD4 Oryctolagus cuniculus ENSOCUG00000003929 I 0.000
SMAD4 Otolemur garnettii ENSOGAG00000012081 I 0.000
ENSONIG00000001557 Oreochromis niloticus ENSONIG00000001557 I 0.000
ENSONIG00000010360 Oreochromis niloticus ENSONIG00000010360 I 0.000
ENSONIG00000015035 Oreochromis niloticus ENSONIG00000015035 I 0.000
SMAD4 Ochotona princeps ENSOPRG00000013601 I 0.000
smad4a Oryzias latipes ENSORLG00000005020 I 0.000
SMAD4 Oryzias latipes ENSORLG00000007703 I 0.000
ENSP00000341551-D1 Bos grunniens ENSP00000341551-D1 I 0.000
ENSP00000381452 Macaca fascicularis ENSP00000381452 I 0.000
ENSPANG00000024703 Papio anubis ENSPANG00000024703 I 0.000
ENSPFOG00000018987 Poecilia formosa ENSPFOG00000018987 I 0.000
ENSPFOG00000019807 Poecilia formosa ENSPFOG00000019807 I 0.000
ENSPFOG00000019867 Poecilia formosa ENSPFOG00000019867 I 0.000
ENSPMAG00000008404 Petromyzon marinus ENSPMAG00000008404 I 0.000
ENSPMAG00000009414 Petromyzon marinus ENSPMAG00000009414 I 0.000
ENSPPYG00000009165 Pongo abelii ENSPPYG00000009165 I 0.000
ENSPSIG00000014614 Pelodiscus sinensis ENSPSIG00000014614 I 0.000
SMAD4 Pan troglodytes ENSPTRG00000010028 I 0.000
Smad4 Rattus norvegicus ENSRNOG00000051965 I 0.000
ENSSHAG00000010344 Sarcophilus harrisii ENSSHAG00000010344 I 0.000
SMAD4 Sus scrofa ENSSSCG00000004524 I 0.000
ENSSTOG00000028580 Ictidomys tridecemlineatus ENSSTOG00000028580 I 0.000
SMAD4 Tupaia belangeri ENSTBEG00000014105 I 0.000
gb:cr929477 Tetraodon nigroviridis ENSTNIG00000003193 I 0.000
si:dkey-222b8.1 Tetraodon nigroviridis ENSTNIG00000005007 I 0.000
SMAD4 Tetraodon nigroviridis ENSTNIG00000009050 I 0.000
si:dkey-222b8.1 Takifugu rubripes ENSTRUG00000004163 I 0.000
gb:cr929477 Takifugu rubripes ENSTRUG00000011769 I 0.000
SMAD4 Takifugu rubripes ENSTRUG00000014045 I 0.000
ENSTSYG00000009792 Tarsius syrichta ENSTSYG00000009792 I 0.000
SMAD4 Vicugna pacos ENSVPAG00000006757 I 0.000
ENSXMAG00000005051 Xiphophorus maculatus ENSXMAG00000005051 I 0.000
ENSXMAG00000015245 Xiphophorus maculatus ENSXMAG00000015245 I 0.000
e_gw.452.68.1 Branchiostoma floridae e_gw.452.68.1 I 0.000
Med Drosophila melanogaster FBgn0011655 D 0.000
GA14643 Drosophila pseudoobscura FBgn0074670 I 0.000
GF22974 Drosophila ananassae FBgn0099968 I 0.000
GG11819 Drosophila erecta FBgn0104114 I 0.000
GH18642 Drosophila grimshawi FBgn0126109 I 0.000
GI23400 Drosophila mojavensis FBgn0146126 I 0.000
GL23637 Drosophila persimilis FBgn0161227 I 0.000
GM16436 Drosophila sechellia FBgn0171351 I 0.000
GJ23092 Drosophila virilis FBgn0210194 I 0.000
GK11724 Drosophila willistoni FBgn0213735 I 0.000
GE10952 Drosophila yakuba FBgn0228782 I 0.000
fgenesh2_pg.scaffold_230000050 Branchiostoma floridae fgenesh2_pg.scaffold_230000050 I 0.000
GB50071 Apis mellifera GB50071 I 0.000
Gfo_R011803 Geospiza fortis Gfo_R011803 I 0.000
Gfo_R016223 Geospiza fortis Gfo_R016223 I 0.000
GPLIN_000772200 Globodera pallida GPLIN_000772200 I 0.000
GPUH_0001329001 Gongylonema pulchrum GPUH_0001329001 I 0.000
HelroG76435 Helobdella robusta HelroG76435 I 0.000
HelroG88197 Helobdella robusta HelroG88197 I 0.000
HHAL000393-PA Halyomorpha halys HHAL000393-PA I 0.000
HHAL000394-PA Halyomorpha halys HHAL000394-PA I 0.000
HMEL002203 Heliconius melpomene HMEL002203 I 0.000
Hsal_09633--XP_392838.3_APIME Harpegnathos saltator Hsal_09633--XP_392838.3_APIME I 0.000
ISCW018468 Ixodes scapularis ISCW018468 I 0.000
KGM_12572 Danaus plexippus KGM_12572 I 0.000
L798_13939 Zootermopsis nevadensis L798_13939 I 0.000
L889_g22387 Steinernema feltiae L889_g22387 I 0.000
L893_g15056 Steinernema glaseri L893_g15056 I 0.000
LCUP007928 Lucilia cuprina LCUP007928 I 0.000
LDEC015949 Leptinotarsa decemlineata LDEC015949 I 0.000
LLOJ008806 Lutzomyia longipalpis LLOJ008806 I 0.000
LOAG_08923 Loa loa LOAG_08923 I 0.000
LotgiG131078 Lottia gigantea LotgiG131078 I 0.000
MCINX014520 Melitaea cinxia MCINX014520 I 0.000
MDOA012885 Musca domestica MDOA012885 I 0.000
ML02191a Mnemiopsis leidyi ML02191a I 0.000
Myotis_brandtii_Smad4_10005924 Myotis brandtii Myotis_brandtii_Smad4_10005924 I 0.000
nAv.1.0.1.g00430 Acanthocheilonema viteae nAv.1.0.1.g00430 I 0.000
nDi.2.2.2.g01429 Dirofilaria immitis nDi.2.2.2.g01429 I 0.000
NEMVEDRAFT_v1g18576 Nematostella vectensis NEMVEDRAFT_v1g18576 I 0.000
NEMVEDRAFT_v1g248037 Nematostella vectensis NEMVEDRAFT_v1g248037 I 0.000
nLs.2.1.2.g01457 Litomosoides sigmodontis nLs.2.1.2.g01457 I 0.000
nOo.2.0.1.g00181 Onchocerca ochengi nOo.2.0.1.g00181 I 0.000
NV12984 Nasonia vitripennis NV12984 I 0.000
Ocbimv22032358m.g Octopus bimaculoides Ocbimv22032358m.g I 0.000
OESDEN_03018 Oesophagostomum dentatum OESDEN_03018 I 0.000
Ogr06720 Ophisaurus gracilis Ogr06720 I 0.000
Ogr14199 Ophisaurus gracilis Ogr14199 I 0.000
PHUM002670 Pediculus humanus PHUM002670 I 0.000
PPAI002168 Phlebotomus papatasi PPAI002168 I 0.000
Pvit_01119 Pogona vitticeps Pvit_01119 I 0.000
RPRC010188 Rhodnius prolixus RPRC010188 I 0.000
Sakowv30001112m.g Saccoglossus kowalevskii Sakowv30001112m.g I 0.000
SINV15516 Solenopsis invicta SINV15516 I 0.000
Sjc_0030450 Schistosoma japonicum Sjc_0030450 I 0.000
SMAR013850 Strigamia maritima SMAR013850 I 0.000
Smp_033950 Schistosoma mansoni Smp_033950 I 0.000
SMTD_0002197901 Schistosoma mattheei SMTD_0002197901 I 0.000
SMU15015494 Schmidtea mediterranea SMU15015494 I 0.000
SPU_004287 Strongylocentrotus purpuratus SPU_004287 I 0.000
SPU_017971 Strongylocentrotus purpuratus SPU_017971 I 0.000
SROB_0000384401 Schistosoma rodhaini SROB_0000384401 I 0.000
SVUK_0000938201 Strongylus vulgaris SVUK_0000938201 I 0.000
T265_11013 Opisthorchis viverrini T265_11013 I 0.000
TC010848 Tribolium castaneum TC010848 I 0.000
TCLT_0000917301 Thelazia callipaeda TCLT_0000917301 I 0.000
TELCIR_19676 Teladorsagia circumcincta TELCIR_19676 I 0.000
tetur10g00380 Tetranychus urticae tetur10g00380 I 0.000
tetur10g00400 Tetranychus urticae tetur10g00400 I 0.000
TMUE_s0006012700 Trichuris muris TMUE_s0006012700 I 0.000
TRE_0001987301 Trichobilharzia regenti TRE_0001987301 I 0.000
TriadG30731 Trichoplax adhaerens TriadG30731 I 0.000
TTRE_0000855901 Trichuris trichiura TTRE_0000855901 I 0.000
WBGene00241622 Onchocerca volvulus WBGene00241622 I 0.000
WUBG_02880 Wuchereria bancrofti WUBG_02880 I 0.000
smad4.1 Xenopus tropicalis XB-GENE-485691 I 0.000
smad4.2.S Xenopus laevis XB-GENE-5995204 I 0.000
smad4.2.L Xenopus laevis XB-GENE-6256010 I 0.000
smad4.1.L Xenopus laevis XB-GENE-865543 I 0.000
XP_002161797.1 Hydra magnipapillata XP_002161797.1 I 0.000
YQE_06624 Dendroctonus ponderosae YQE_06624 I 0.000
YQE_08737 Dendroctonus ponderosae YQE_08737 I 0.000