e_gw.452.68.1 (Branchiostoma floridae)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 e_gw.452.68.1 T325354_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Smad4
M05889_2.00 		Mus musculus
KCYAGACR
YGTCTRGM		 SMiLE-seq
Isakova et al.(2017)
Smad4 		0.980 0.980
SMAD4
M09377_2.00 		Homo sapiens
DRGTGNSAGACWN
NWGTCTSNCACYH		 Misc
Kulakovskiy et al.(2013)
SMAD4_HUMAN.H11MO.0.B 		0.980 0.980
Smad4
M09382_2.00 		Mus musculus
DGWGNBAGVCWN
NWGBCTVNCWCH		 Misc
Kulakovskiy et al.(2013)
SMAD4_MOUSE.H11MO.0.A 		0.980 0.980
SMAD4
M09634_2.00 		Homo sapiens
NNNYGTCTGS
SCAGACRNNN		 Misc
Heinz et al.(2010)
ESC-SMAD4_GSE29422 		0.980 0.980
SMAD4
M11275_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q4 		0.980 0.980
SMAD4
M11276_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q6_01 		0.980 0.980
SMAD4
M11277_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q6 		0.980 0.980
Med
M06447_2.00 		Drosophila melanogaster
KCGBCDKKSHVT
ABDSMMHGVCGM		 B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655 		0.961 0.961
Med
M09693_2.00 		Drosophila melanogaster
YYBYVYCTGYY
RRCAGRBRVRR		 Misc
Kulakovskiy et al.(2009)
Med 		0.961 0.961
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.452.68.1 SMAD 33 134

Links

Other SMAD family TFs
Other Branchiostoma floridae TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMAD4 Anolis carolinensis ENSACAG00000010186 I 0.980
ENSAMEG00000002899 Ailuropoda melanoleuca ENSAMEG00000002899 I 0.980
ENSAPLG00000003924 Anas platyrhynchos ENSAPLG00000003924 I 0.980
SMAD4 Bos taurus ENSBTAG00000006919 I 0.980
SMAD4 Canis familiaris ENSCAFG00000000164 I 0.980
SMAD4 Choloepus hoffmanni ENSCHOG00000000860 I 0.980
SMAD4 Callithrix jacchus ENSCJAG00000001910 I 0.980
SMAD4 Cavia porcellus ENSCPOG00000006470 I 0.980
ENSCSAG00000018094 Chlorocebus sabaeus ENSCSAG00000018094 I 0.980
SMAD4 Dasypus novemcinctus ENSDNOG00000005063 I 0.980
SMAD4 Equus caballus ENSECAG00000017857 I 0.980
SMAD4 Echinops telfairi ENSETEG00000007750 I 0.980
SMAD4 Felis catus ENSFCAG00000005257 I 0.980
SMAD4 Homo sapiens ENSG00000141646 D 0.980
SMAD4 Gorilla gorilla ENSGGOG00000013662 I 0.980
SMAD4 Loxodonta africana ENSLAFG00000012595 I 0.980
SMAD4 Myotis lucifugus ENSMLUG00000013944 I 0.980
SMAD4 Macaca mulatta ENSMMUG00000018334 I 0.980
SMAD4 Monodelphis domestica ENSMODG00000010995 I 0.980
ENSMPUG00000008776 Mustela putorius furo ENSMPUG00000008776 I 0.980
Smad4 Mus musculus ENSMUSG00000024515 D 0.980
ENSNLEG00000011859 Nomascus leucogenys ENSNLEG00000011859 I 0.980
SMAD4 Ornithorhynchus anatinus ENSOANG00000008117 I 0.980
ENSOANG00000030959 Ornithorhynchus anatinus ENSOANG00000030959 I 0.980
ENSOARG00000004662 Ovis aries ENSOARG00000004662 I 0.980
SMAD4 Oryctolagus cuniculus ENSOCUG00000003929 I 0.980
SMAD4 Otolemur garnettii ENSOGAG00000012081 I 0.980
SMAD4 Ochotona princeps ENSOPRG00000013601 I 0.980
ENSPANG00000024703 Papio anubis ENSPANG00000024703 I 0.980
ENSPPYG00000009165 Pongo abelii ENSPPYG00000009165 I 0.980
ENSPSIG00000014614 Pelodiscus sinensis ENSPSIG00000014614 I 0.980
SMAD4 Pan troglodytes ENSPTRG00000010028 I 0.980
Smad4 Rattus norvegicus ENSRNOG00000051965 I 0.980
ENSSHAG00000010344 Sarcophilus harrisii ENSSHAG00000010344 I 0.980
SMAD4 Sus scrofa ENSSSCG00000004524 I 0.980
ENSSTOG00000028580 Ictidomys tridecemlineatus ENSSTOG00000028580 I 0.980
SMAD4 Tupaia belangeri ENSTBEG00000014105 I 0.980
ENSTSYG00000009792 Tarsius syrichta ENSTSYG00000009792 I 0.980
SMAD4 Vicugna pacos ENSVPAG00000006757 I 0.980
ISCW018468 Ixodes scapularis ISCW018468 I 0.980
Afo_R008709 Aptenodytes forsteri Afo_R008709 I 0.980
Alligator_sinensis_CCG008910.1 Alligator sinensis Alligator_sinensis_CCG008910.1 I 0.980
Brh_R010414 Buceros rhinoceros Brh_R010414 I 0.980
Cmyd_10005540 Chelonia mydas Cmyd_10005540 I 0.980
ENSP00000341551-D1 Bos grunniens ENSP00000341551-D1 I 0.980
ENSP00000381452 Macaca fascicularis ENSP00000381452 I 0.980
Gfo_R011803 Geospiza fortis Gfo_R011803 I 0.980
Gfo_R016223 Geospiza fortis Gfo_R016223 I 0.980
Myotis_brandtii_Smad4_10005924 Myotis brandtii Myotis_brandtii_Smad4_10005924 I 0.980
Ogr14199 Ophisaurus gracilis Ogr14199 I 0.980
Pvit_01119 Pogona vitticeps Pvit_01119 I 0.980
AAH84196 Xenopus laevis AAH84196 I 0.980
smad4.1 Xenopus tropicalis XB-GENE-485691 I 0.980
smad4.1.L Xenopus laevis XB-GENE-865543 I 0.980
LLOJ008806 Lutzomyia longipalpis LLOJ008806 I 0.980
PPAI002168 Phlebotomus papatasi PPAI002168 I 0.980
AAEL013896 Aedes aegypti AAEL013896 I 0.971
ENSAMXG00000019219 Astyanax mexicanus ENSAMXG00000019219 I 0.971
smad4a Danio rerio ENSDARG00000075226 I 0.971
Smad4 Dipodomys ordii ENSDORG00000009089 I 0.971
ENSGMOG00000013964 Gadus morhua ENSGMOG00000013964 I 0.971
smad4a Oryzias latipes ENSORLG00000005020 I 0.971
SMAD4 Oryzias latipes ENSORLG00000007703 I 0.971
ENSPFOG00000018987 Poecilia formosa ENSPFOG00000018987 I 0.971
ENSPFOG00000019807 Poecilia formosa ENSPFOG00000019807 I 0.971
ENSPMAG00000008404 Petromyzon marinus ENSPMAG00000008404 I 0.971
SMAD4 Tetraodon nigroviridis ENSTNIG00000009050 I 0.971
SMAD4 Takifugu rubripes ENSTRUG00000014045 I 0.971
ENSXMAG00000005051 Xiphophorus maculatus ENSXMAG00000005051 I 0.971
ENSXMAG00000015245 Xiphophorus maculatus ENSXMAG00000015245 I 0.971
L798_13939 Zootermopsis nevadensis L798_13939 I 0.971
PHUM002670 Pediculus humanus PHUM002670 I 0.971
SMAR013850 Strigamia maritima SMAR013850 I 0.971
CpipJ_CPIJ002563 Culex pipiens CpipJ_CPIJ002563 I 0.961
CPIJ002563 Culex quinquefasciatus CPIJ002563 I 0.961
smad4a Gasterosteus aculeatus ENSGACG00000007495 I 0.961
ENSGACG00000016858 Gasterosteus aculeatus ENSGACG00000016858 I 0.961
ENSGMOG00000005844 Gadus morhua ENSGMOG00000005844 I 0.961
ENSONIG00000014036 Oreochromis niloticus ENSONIG00000014036 I 0.961
ENSONIG00000015035 Oreochromis niloticus ENSONIG00000015035 I 0.961
ENSPMAG00000009414 Petromyzon marinus ENSPMAG00000009414 I 0.961
Med Drosophila melanogaster FBgn0011655 D 0.961
GA14643 Drosophila pseudoobscura FBgn0074670 I 0.961
GF22974 Drosophila ananassae FBgn0099968 I 0.961
GG11819 Drosophila erecta FBgn0104114 I 0.961
GH18642 Drosophila grimshawi FBgn0126109 I 0.961
GI23400 Drosophila mojavensis FBgn0146126 I 0.961
GL23637 Drosophila persimilis FBgn0161227 I 0.961
GM16436 Drosophila sechellia FBgn0171351 I 0.961
GJ23092 Drosophila virilis FBgn0210194 I 0.961
GK11724 Drosophila willistoni FBgn0213735 I 0.961
GE10952 Drosophila yakuba FBgn0228782 I 0.961
GB50071 Apis mellifera GB50071 I 0.961
NV12984 Nasonia vitripennis NV12984 I 0.961
SINV15516 Solenopsis invicta SINV15516 I 0.961
TC010848 Tribolium castaneum TC010848 I 0.961
Cflo_07183--XP_392838.3_APIME Camponotus floridanus Cflo_07183--XP_392838.3_APIME I 0.961
Hsal_09633--XP_392838.3_APIME Harpegnathos saltator Hsal_09633--XP_392838.3_APIME I 0.961
Ogr06720 Ophisaurus gracilis Ogr06720 I 0.961
Ocbimv22032358m.g Octopus bimaculoides Ocbimv22032358m.g I 0.961
HHAL000393-PA Halyomorpha halys HHAL000393-PA I 0.961
LCUP007928 Lucilia cuprina LCUP007928 I 0.961
LDEC015949 Leptinotarsa decemlineata LDEC015949 I 0.961
BGLB014287 Biomphalaria glabrata BGLB014287 I 0.961
MDOA012885 Musca domestica MDOA012885 I 0.961
ACYPI000365 Acyrthosiphon pisum ACYPI000365 I 0.951
AGAP002902 Anopheles gambiae AGAP002902 I 0.951
BGIBMGA010110 Bombyx mori BGIBMGA010110 I 0.951
DAPPUDRAFT_304115 Daphnia pulex DAPPUDRAFT_304115 I 0.951
ENSAMXG00000017275 Astyanax mexicanus ENSAMXG00000017275 I 0.951
ENSAMXG00000018339 Astyanax mexicanus ENSAMXG00000018339 I 0.951
SMAD4 Danio rerio ENSDARG00000012649 I 0.951
si:dkey-222b8.1 Danio rerio ENSDARG00000045094 I 0.951
si:dkey-222b8.1 Gasterosteus aculeatus ENSGACG00000000538 I 0.951
ENSLACG00000007810 Latimeria chalumnae ENSLACG00000007810 I 0.951
ENSMEUG00000001823 Macropus eugenii ENSMEUG00000001823 I 0.951
ENSONIG00000010360 Oreochromis niloticus ENSONIG00000010360 I 0.951
si:dkey-222b8.1 Takifugu rubripes ENSTRUG00000004163 I 0.951
HMEL002203 Heliconius melpomene HMEL002203 I 0.951
KGM_12572 Danaus plexippus KGM_12572 I 0.951
LotgiG131078 Lottia gigantea LotgiG131078 I 0.951
MCINX014520 Melitaea cinxia MCINX014520 I 0.951
RPRC010188 Rhodnius prolixus RPRC010188 I 0.951
YQE_06624 Dendroctonus ponderosae YQE_06624 I 0.951
CLEC002594 Cimex lectularius CLEC002594 I 0.951
HHAL000394-PA Halyomorpha halys HHAL000394-PA I 0.951
smad4.2.S Xenopus laevis XB-GENE-5995204 I 0.951
smad4.2.L Xenopus laevis XB-GENE-6256010 I 0.951
AARA004719 Anopheles arabiensis AARA004719 I 0.951
AATE010695 Anopheles atroparvus AATE010695 I 0.951
ACHR000067 Anopheles christyi ACHR000067 I 0.951
ACOM037505 Anopheles coluzzii ACOM037505 I 0.951
ACUA025512 Anopheles culicifacies ACUA025512 I 0.951
ADIR002761 Anopheles dirus ADIR002761 I 0.951
AEPI002385 Anopheles epiroticus AEPI002385 I 0.951
AFAF011208 Anopheles farauti AFAF011208 I 0.951
AFUN009864 Anopheles funestus AFUN009864 I 0.951
AMAM019778 Anopheles maculatus AMAM019778 I 0.951
AMEM015931 Anopheles merus AMEM015931 I 0.951
AMIN000723 Anopheles minimus AMIN000723 I 0.951
AQUA009305 Anopheles quadriannulatus AQUA009305 I 0.951
ASTEI00079 Anopheles stephensi ASTEI00079 I 0.951
CapteG179368 Capitella teleta CapteG179368 I 0.941
si:dkey-239n17.4 Danio rerio ENSDARG00000070428 I 0.941
ENSGMOG00000000297 Gadus morhua ENSGMOG00000000297 I 0.941
SPU_004287 Strongylocentrotus purpuratus SPU_004287 I 0.941
ADAC007516 Anopheles darlingi ADAC007516 I 0.931
ENSONIG00000001557 Oreochromis niloticus ENSONIG00000001557 I 0.931
gb:cr929477 Tetraodon nigroviridis ENSTNIG00000003193 I 0.931
gb:cr929477 Takifugu rubripes ENSTRUG00000011769 I 0.931
NEMVEDRAFT_v1g248037 Nematostella vectensis NEMVEDRAFT_v1g248037 I 0.931
fgenesh2_pg.scaffold_230000050 Branchiostoma floridae fgenesh2_pg.scaffold_230000050 I 0.931
AALB009485 Anopheles albimanus AALB009485 I 0.931
tetur10g00400 Tetranychus urticae tetur10g00400 I 0.922
ACYPI003759 Acyrthosiphon pisum ACYPI003759 I 0.902
smad4 Ciona intestinalis ENSCING00000005559 I 0.902
ENSCSAVG00000006480 Ciona savignyi ENSCSAVG00000006480 I 0.902
ACYPI008450 Acyrthosiphon pisum ACYPI008450 I 0.892
ENSGACG00000003171 Gasterosteus aculeatus ENSGACG00000003171 I 0.892
ENSPFOG00000019867 Poecilia formosa ENSPFOG00000019867 I 0.892
si:dkey-222b8.1 Tetraodon nigroviridis ENSTNIG00000005007 I 0.892
HelroG88197 Helobdella robusta HelroG88197 I 0.892
YQE_08737 Dendroctonus ponderosae YQE_08737 I 0.892
XP_002161797.1 Hydra magnipapillata XP_002161797.1 I 0.882
ACYPI005550 Acyrthosiphon pisum ACYPI005550 I 0.873
Alligator_sinensis_CCG001823.1 Alligator sinensis Alligator_sinensis_CCG001823.1 I 0.873
Aqu1.215833 Amphimedon queenslandica Aqu1.215833 I 0.863
Aqu1.215834 Amphimedon queenslandica Aqu1.215834 I 0.863
ACEP19585 Atta cephalotes ACEP19585 I 0.843
ML02191a Mnemiopsis leidyi ML02191a I 0.843
TMUE_s0006012700 Trichuris muris TMUE_s0006012700 I 0.843
TTRE_0000855901 Trichuris trichiura TTRE_0000855901 I 0.843
EFV62078 Trichinella spiralis EFV62078 I 0.833
D917_09719 Trichinella nativa D917_09719 I 0.833
SMU15015494 Schmidtea mediterranea SMU15015494 I 0.824
TriadG30731 Trichoplax adhaerens TriadG30731 I 0.814
D915_03789 Fasciola hepatica D915_03789 I 0.814
T265_11013 Opisthorchis viverrini T265_11013 I 0.814
ASIM_0001604001 Anisakis simplex ASIM_0001604001 I 0.804
ECPE_0001832001 Echinostoma caproni ECPE_0001832001 I 0.804
HelroG76435 Helobdella robusta HelroG76435 I 0.794
GPUH_0001329001 Gongylonema pulchrum GPUH_0001329001 I 0.794
Bm3575 Brugia malayi Bm3575 I 0.784
BTMF_0000404601 Brugia timori BTMF_0000404601 I 0.784
TRE_0001987301 Trichobilharzia regenti TRE_0001987301 I 0.784
tetur10g00380 Tetranychus urticae tetur10g00380 I 0.779
WUBG_02880 Wuchereria bancrofti WUBG_02880 I 0.775
ASU_13433 Ascaris suum ASU_13433 I 0.775
EEL_0000707501 Elaeophora elaphi EEL_0000707501 I 0.775
nAv.1.0.1.g00430 Acanthocheilonema viteae nAv.1.0.1.g00430 I 0.775
nDi.2.2.2.g01429 Dirofilaria immitis nDi.2.2.2.g01429 I 0.775
nLs.2.1.2.g01457 Litomosoides sigmodontis nLs.2.1.2.g01457 I 0.775
ENSLOCG00000012872 Lepisosteus oculatus ENSLOCG00000012872 I 0.765
LOAG_08923 Loa loa LOAG_08923 I 0.765
WBGene00241622 Onchocerca volvulus WBGene00241622 I 0.765
Sjc_0030450 Schistosoma japonicum Sjc_0030450 I 0.765
nOo.2.0.1.g00181 Onchocerca ochengi nOo.2.0.1.g00181 I 0.765
TCLT_0000917301 Thelazia callipaeda TCLT_0000917301 I 0.765
Sakowv30001112m.g Saccoglossus kowalevskii Sakowv30001112m.g I 0.761
Aqu1.229767 Amphimedon queenslandica Aqu1.229767 I 0.755
NEMVEDRAFT_v1g18576 Nematostella vectensis NEMVEDRAFT_v1g18576 I 0.755
Smp_033950 Schistosoma mansoni Smp_033950 I 0.735
SMTD_0002197901 Schistosoma mattheei SMTD_0002197901 I 0.735
SROB_0000384401 Schistosoma rodhaini SROB_0000384401 I 0.725
GPLIN_000772200 Globodera pallida GPLIN_000772200 I 0.716
L893_g15056 Steinernema glaseri L893_g15056 I 0.706
L889_g22387 Steinernema feltiae L889_g22387 I 0.703