PGSC0003DMG400011810 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400011810 T222171_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.867 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.867 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.867 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.911
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400030829 Homeodomain 22 81

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003368 Ricinus communis 29794.m003368 N
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N
SIGC Arabidopsis thaliana AT3G53920 N
Bo4g120510 Brassica oleracea Bo4g120510 N
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N
Bra014857 Brassica rapa Bra014857 N
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N
Carubv10016920m.g Capsella rubella Carubv10016920m.g N
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N
Ca_14896 Cicer arietinum Ca_14896 N
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N
GLYMA17G26620 Glycine max GLYMA17G26620 N
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N
MDP0000135483 Malus domestica MDP0000135483 N
MDP0000315125 Malus domestica MDP0000315125 N
mgf012819m Mimulus guttatus mgf012819m N
MTR_1g007370 Medicago truncatula MTR_1g007370 N
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N
PK05603.1 Cannabis sativa PK05603.1 N
Pm005208 Prunus mume Pm005208 N
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N
TCM_037242 Theobroma cacao TCM_037242 N
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N
SIGC Vitis vinifera VIT_04s0008g00600 N