Ciclev10016073m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10016073m.g T286576_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G24120
M00729_2.00 		Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN		 PBM
Chang et al.(2013)
pTH7086 		0.769 0.851
UNE16
M01270_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Lambert et al.(2019)
pTH9967 		0.769 0.851
AT3G24120
M07085_2.00 		Arabidopsis thaliana
HAKATTCB
VGAATMTD		 Dap-seq
OMalley et al.(2016)
At3g24120_col_a 		0.769 0.851
AT3G24120
M07086_2.00 		Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN		 Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a 		0.769 0.851
PHL11
M07134_2.00 		Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
AT5G45580_col_a 		0.717 0.787
PHL11
M07135_2.00 		Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN		 Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a 		0.717 0.787
MYR1
M02309_2.00 		Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN		 PBM
Weirauch et al.(2014)
pTH8859 		0.704 0.766
MYR2
M02294_2.00 		Arabidopsis thaliana
NKATDCBNN
NNVGHATMN		 PBM
Weirauch et al.(2014)
pTH7097 		0.698 0.745
MYR2
M07063_2.00 		Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN		 Dap-seq
OMalley et al.(2016)
At3g04030_col_a 		0.698 0.745
MYR2
M07064_2.00 		Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB		 Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a 		0.698 0.745
PHL12
M01077_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Sullivan et al.(2014)
pTH7098 		0.691 0.809
PHL12
M07079_2.00 		Arabidopsis thaliana
RGAATATTCYYTWN
NWARRGAATATTCY		 Dap-seq
OMalley et al.(2016)
At3g12730_col_a 		0.691 0.809
PHL12
M07080_2.00 		Arabidopsis thaliana
NNRAAKATTCBHHN
NDDVGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a 		0.691 0.809
PHL7
M02292_2.00 		Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN		 PBM
Weirauch et al.(2014)
pTH7253 		0.681 0.745
PK10342.1
M02351_2.00 		Cannabis sativa
WAGATKCS
SGMATCTW		 PBM
Weirauch et al.(2014)
pTH9489 		0.681 0.745
PHL7
M07040_2.00 		Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH		 Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a 		0.681 0.745
PHL7
M07041_2.00 		Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB		 Dap-seq
OMalley et al.(2016)
At2g01060_col 		0.681 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016073m Myb 36 87
Ciclev10016143m Myb 36 87

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

626 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASU_02755 Ascaris suum ASU_02755 I
ASU_03657 Ascaris suum ASU_03657 I
CBG10855 Caenorhabditis briggsae CBG10855 I
CBG10857 Caenorhabditis briggsae CBG10857 I
CBN24827 Caenorhabditis brenneri CBN24827 I
CBN29725 Caenorhabditis brenneri CBN29725 I
CJA00680 Caenorhabditis japonica CJA00680 I
CJA08896 Caenorhabditis japonica CJA08896 I
CRE00149 Caenorhabditis remanei CRE00149 I
CRE00606 Caenorhabditis remanei CRE00606 I
CRE27053 Caenorhabditis remanei CRE27053 I
HCOI01292200 Haemonchus contortus HCOI01292200 I
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I
L889_g1557 Steinernema feltiae L889_g1557 I
L889_g1891 Steinernema feltiae L889_g1891 I
L892_g17612 Steinernema scapterisci L892_g17612 I
L892_g4169 Steinernema scapterisci L892_g4169 I
L893_g28857 Steinernema glaseri L893_g28857 I
L893_g3565 Steinernema glaseri L893_g3565 I
L898_g9866 Steinernema monticolum L898_g9866 I
NECAME_08394 Necator americanus NECAME_08394 I
PEQ_0000722401 Parascaris equorum PEQ_0000722401 I
PPA06637 Pristionchus pacificus PPA06637 I
PPA21777 Pristionchus pacificus PPA21777 I
PPA29548 Pristionchus pacificus PPA29548 N
PPA29597 Pristionchus pacificus PPA29597 I
PTRK_0000843500 Parastrongyloides trichosuri PTRK_0000843500 N
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I
scaffold552-EXSNAP2012.18 Pristionchus exspectatus scaffold552-EXSNAP2012.18 I
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I
TCNE_0001076801 Toxocara canis TCNE_0001076801 N
nhr-120 Caenorhabditis elegans WBGene00003710 I
nhr-136 Caenorhabditis elegans WBGene00003726 I
nhr-173 Caenorhabditis elegans WBGene00016975 I