Gorai.002G009300 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.002G009300 T287483_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.758 0.849
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.758 0.849
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.758 0.849
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.753 0.817
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.753 0.817
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.747 0.796
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.744 0.817
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.687 0.763
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.685 0.785
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.685 0.785
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.685 0.785
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.685 0.785
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.685 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G009300.1 Myb 9 55
Gorai.002G009300.1 Myb 61 106

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29708.m000185 Ricinus communis 29708.m000185 I
30169.m006395 Ricinus communis 30169.m006395 I
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I
EIL1 Arabidopsis thaliana AT2G27050 D
EIN3 Arabidopsis thaliana AT3G20770 D
BGIOSGA012535 Oryza indica BGIOSGA012535 I
BGIOSGA023694 Oryza indica BGIOSGA023694 I
Bo1g108650 Brassica oleracea Bo1g108650 I
Bo3g041690 Brassica oleracea Bo3g041690 I
Bo3g076180 Brassica oleracea Bo3g076180 I
Bo5g106280 Brassica oleracea Bo5g106280 I
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I
Bra000528 Brassica rapa Bra000528 I
Bra001802 Brassica rapa Bra001802 I
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I
Carubv10013213m.g Capsella rubella Carubv10013213m.g I
Carubv10022879m.g Capsella rubella Carubv10022879m.g I
cassava3620.m1 Manihot esculenta cassava3620.m1 I
Ca_07534 Cicer arietinum Ca_07534 I
Ca_10236 Cicer arietinum Ca_10236 I
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I
Cucsa.142750 Cucumis sativus Cucsa.142750 I
Cucsa.143220 Cucumis sativus Cucsa.143220 I
Cucsa.364340 Cucumis sativus Cucsa.364340 I
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I
evm.TU.supercontig_54.30 Carica papaya evm.TU.supercontig_54.30 I
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D
F775_28545 Aegilops tauschii F775_28545 I
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I
GLYMA02G44220 Glycine max GLYMA02G44220 I
GLYMA13G03660 Glycine max GLYMA13G03660 I
GLYMA13G03700 Glycine max GLYMA13G03700 I
GLYMA13G41751 Glycine max GLYMA13G41751 I
GLYMA14G04550 Glycine max GLYMA14G04550 I
GLYMA15G03650 Glycine max GLYMA15G03650 I
GLYMA20G12250 Glycine max GLYMA20G12250 I
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I
GRMZM2G003558 Zea mays GRMZM2G003558 I
GRMZM2G033570 Zea mays GRMZM2G033570 I
GRMZM2G151811 Zea mays GRMZM2G151811 I
GRMZM2G317584 Zea mays GRMZM2G317584 I
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I
LPERR03G13760 Leersia perrieri LPERR03G13760 I
LPERR07G23570 Leersia perrieri LPERR07G23570 I
MDP0000202831 Malus domestica MDP0000202831 I
MDP0000212881 Malus domestica MDP0000212881 I
MDP0000306498 Malus domestica MDP0000306498 I
MDP0000564884 Malus domestica MDP0000564884 I
mgf012394m Mimulus guttatus mgf012394m I
mgf015996m Mimulus guttatus mgf015996m I
mgf018950m Mimulus guttatus mgf018950m I
MLOC_14619 Hordeum vulgare MLOC_14619 I
MTR_2g098470 Medicago truncatula MTR_2g098470 I
MTR_3g078770 Medicago truncatula MTR_3g078770 I
MTR_5g087790 Medicago truncatula MTR_5g087790 I
OBART07G26760 Oryza barthii OBART07G26760 I
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I
OMERI03G14140 Oryza meridionalis OMERI03G14140 I
OMERI07G23380 Oryza meridionalis OMERI07G23380 I
ONIVA03G16680 Oryza nivara ONIVA03G16680 I
ONIVA07G26490 Oryza nivara ONIVA07G26490 I
OPUNC03G15240 Oryza punctata OPUNC03G15240 I
OPUNC07G25150 Oryza punctata OPUNC07G25150 I
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I
OS03G0324200 Oryza sativa OS03G0324200 I
OS03G0324300 Oryza sativa OS03G0324300 I
OS07G0685700 Oryza sativa OS07G0685700 I
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I
Pavir.J01001 Panicum virgatum Pavir.J01001 I
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I
PK01239.1 Cannabis sativa PK01239.1 I
PK13351.1 Cannabis sativa PK13351.1 I
PK19114.1 Cannabis sativa PK19114.1 I
Pm017009 Prunus mume Pm017009 I
Pm028171 Prunus mume Pm028171 I
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I
PRUPE_ppa003493mg Prunus persica PRUPE_ppa003493mg I
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I
Sb01g036740 Sorghum bicolor Sb01g036740 I
Sb02g043350 Sorghum bicolor Sb02g043350 I
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I
SELMODRAFT_16064 Selaginella moellendorffii SELMODRAFT_16064 I
SELMODRAFT_16065 Selaginella moellendorffii SELMODRAFT_16065 I
Si029213m.g Setaria italica Si029213m.g I
Si034616m.g Setaria italica Si034616m.g I
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I
TCM_042022 Theobroma cacao TCM_042022 I
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I
EIL3 Vitis vinifera VIT_06s0004g01610 I
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I