fgenesh1_pg.scaffold_337000032 (Physcomitrella patens)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 fgenesh1_pg.scaffold_337000032 T323295_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.961 0.813
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.960 0.827
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.952 0.760
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_337000032 SBP 153 227

Links

Other SBP family TFs
Other Physcomitrella patens TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30138.m003942 Ricinus communis 30138.m003942 I 0.906
30174.m008803 Ricinus communis 30174.m008803 I 0.960
30174.m009082 Ricinus communis 30174.m009082 I 0.906
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.927
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.914
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.919
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.942
SPL8 Arabidopsis thaliana AT1G02065 D 0.952
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.931
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.951
SPL10 Oryza indica BGIOSGA023408 I 0.908
Bo5g001290 Brassica oleracea Bo5g001290 I 0.952
Bo8g118210 Brassica oleracea Bo8g118210 I 0.952
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.952
Bra032662 Brassica rapa Bra032662 I 0.952
Bra033221 Brassica rapa Bra033221 I 0.952
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.901
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.900
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.951
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.952
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.952
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.930
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.960
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.905
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.914
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.895
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.913
Ca_18942 Cicer arietinum Ca_18942 I 0.959
Ca_19449 Cicer arietinum Ca_19449 I 0.906
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.899
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.887
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.960
Cla001541 Citrullus lanatus Cla001541 I 0.894
Cla006776 Citrullus lanatus Cla006776 I 0.959
Cla009788 Citrullus lanatus Cla009788 I 0.899
Cla018827 Citrullus lanatus Cla018827 I 0.907
Cla019331 Citrullus lanatus Cla019331 I 0.907
Cla020006 Citrullus lanatus Cla020006 I 0.903
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.887
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.907
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.938
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.898
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.906
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.894
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.898
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.912
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.960
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.960
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.907
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.924
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.960
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.909
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.961
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.959
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.952
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.959
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.898
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.906
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.941
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.959
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.906
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.959
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.906
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.960
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.898
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.960
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.951
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.949
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.908
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.900
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.924
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.944
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.938
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.943
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.951
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.928
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.944
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.892
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.960
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.913
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.951
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.908
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.896
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.903
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.904
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.955
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.954
MDP0000146640 Malus domestica MDP0000146640 I 0.905
MDP0000778465 Malus domestica MDP0000778465 I 0.905
MDP0000803116 Malus domestica MDP0000803116 I 0.959
mgf016085m Mimulus guttatus mgf016085m I 0.958
MLOC_326 Hordeum vulgare MLOC_326 I 0.908
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.894
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.951
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.906
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.906
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.958
OB02G15090 Oryza brachyantha OB02G15090 I 0.913
OB04G34990 Oryza brachyantha OB04G34990 I 0.951
OB06G31100 Oryza brachyantha OB06G31100 I 0.908
OBART04G27990 Oryza barthii OBART04G27990 I 0.951
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.951
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.908
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.951
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.931
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.951
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.908
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.891
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.908
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.951
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.909
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.951
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.908
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.960
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.894
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.931
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.951
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.908
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.896
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.951
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.908
SPL5 Oryza sativa OS02G0177300 I 0.931
SPL8 Oryza sativa OS04G0656500 I 0.951
SPL10 Oryza sativa OS06G0659100 I 0.908
SPL19 Oryza sativa OS11G0496600 I 0.896
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.939
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.908
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.908
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.951
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.951
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.889
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.890
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.912
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.903
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.959
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.959
PK17790.1 Cannabis sativa PK17790.1 I 0.915
PK25779.1 Cannabis sativa PK25779.1 I 0.959
PK26639.1 Cannabis sativa PK26639.1 I 0.896
Pm017777 Prunus mume Pm017777 I 0.938
Pm025028 Prunus mume Pm025028 I 0.897
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.960
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.896
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.900
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.907
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.960
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.902
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.898
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.938
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.906
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.952
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.907
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.960
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.900
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.951
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.908
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.954
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.928
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.925
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.954
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.962
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.962
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.925
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.928
Si006559m.g Setaria italica Si006559m.g I 0.908
Si017338m.g Setaria italica Si017338m.g I 0.924
Si022315m.g Setaria italica Si022315m.g I 0.951
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.959
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.903
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.889
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.908
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.959
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.912
TCM_005622 Theobroma cacao TCM_005622 I 0.960
TCM_011483 Theobroma cacao TCM_011483 I 0.898
TCM_014330 Theobroma cacao TCM_014330 I 0.907
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.952
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.908
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.951
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.905
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.952
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.907