CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Aquca_017_00248 *(Aquilegia coerulea)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Aquca_017_00248	T007501_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.859	0.980
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.859	0.980
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.837	0.959
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.823	0.939
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.756	0.796
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.756	0.796
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.727	0.714
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.722	0.714
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.710	0.673
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.710	0.673
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.707	0.694
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.707	0.694
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.707	0.694
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.703	0.714
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.693	0.694
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.693	0.694
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.692	0.694
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.692	0.694
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.692	0.673
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.691	0.653
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.691	0.653
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.691	0.653
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.691	0.653
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.691	0.653
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.683	0.633
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.683	0.633
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.683	0.633
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.680	0.633
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.680	0.633
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.680	0.633
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.680	0.592
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.680	0.694
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.677	0.633
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Aquca_017_00248.1	AP2	52	102	RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMKGT

Links
Other AP2 family TFs
Other *Aquilegia coerulea* TFs

1145 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CpipJ_CPIJ020011	Culex pipiens	CpipJ_CPIJ020011	I
AAEL011425	Aedes aegypti	AAEL011425	I
ACYPI006576	Acyrthosiphon pisum	ACYPI006576	I
CBN25379	Caenorhabditis brenneri	CBN25379	I
HNAJ_0000793101	Hymenolepis nana	HNAJ_0000793101	I
HPBE_0002408301	Heligmosomoides bakeri	HPBE_0002408301	I
CPIJ020011	Culex quinquefasciatus	CPIJ020011	I
gw1.6.1665.1	Ostreococcus RCC809	gw1.6.1665.1	I
RPRC006380	Rhodnius prolixus	RPRC006380	I
MhA1_Contig400.frz3.gene18	Meloidogyne hapla	MhA1_Contig400.frz3.gene18	N
HCOI02106600	Haemonchus contortus	HCOI02106600	N
MhA1_Contig2971.frz3.fgene1	Meloidogyne hapla	MhA1_Contig2971.frz3.fgene1	N
MhA1_Contig128.frz3.gene5	Meloidogyne hapla	MhA1_Contig128.frz3.gene5	N
maker-nMf.1.1.scaf04887-augustus-gene-0.6	Meloidogyne floridensis	maker-nMf.1.1.scaf04887-augustus-gene-0.6	N
L898_g7743	Steinernema monticolum	L898_g7743	N
L893_g23503	Steinernema glaseri	L893_g23503	N
L892_g23618	Steinernema scapterisci	L892_g23618	N
L889_g16198	Steinernema feltiae	L889_g16198	N
L596_g16476	Steinernema carpocapsae	L596_g16476	N
HmN_000028000	Hymenolepis microstoma	HmN_000028000	N
TTAC_0000692101	Hydatigera taeniaeformis	TTAC_0000692101	N
NBR_0000004401	Nippostrongylus brasiliensis	NBR_0000004401	N
NECAME_16525	Necator americanus	NECAME_16525	N
RSKR_0000171200	Rhabditophanes kr3021	RSKR_0000171200	N
RSKR_0000472700	Rhabditophanes kr3021	RSKR_0000472700	N
RSKR_0000540800	Rhabditophanes kr3021	RSKR_0000540800	N
RSKR_0000733200	Rhabditophanes kr3021	RSKR_0000733200	N
RSKR_0000746900	Rhabditophanes kr3021	RSKR_0000746900	N
scaffold164-EXSNAP2012.19	Pristionchus exspectatus	scaffold164-EXSNAP2012.19	N
scaffold98-EXSNAP2012.51	Pristionchus exspectatus	scaffold98-EXSNAP2012.51	N
SMUV_0000856901	Syphacia muris	SMUV_0000856901	N
SVUK_0001798101	Strongylus vulgaris	SVUK_0001798101	N
TASK_0000475801	Taenia asiatica	TASK_0000475801	N
TsM_000111500	Taenia solium	TsM_000111500	N
CpipJ_CPIJ002953	Culex pipiens	CpipJ_CPIJ002953	N
Minc01744	Meloidogyne incognita	Minc01744	N
CBG04066	Caenorhabditis briggsae	CBG04066	N
CBG09136	Caenorhabditis briggsae	CBG09136	N
CJA19030	Caenorhabditis japonica	CJA19030	N
CPIJ002953	Culex quinquefasciatus	CPIJ002953	N
CRE03995	Caenorhabditis remanei	CRE03995	N
GK22092	Drosophila willistoni	FBgn0224077	N
PMAA_054260	Talaromyces marneffei	PMAA_054260	N
PPA02261	Pristionchus pacificus	PPA02261	N
PPA06513	Pristionchus pacificus	PPA06513	N
hmg-4	Caenorhabditis elegans	WBGene00001974	N
YQE_02071	Dendroctonus ponderosae	YQE_02071	N
LCUP005047	Lucilia cuprina	LCUP005047	N
LDEC020995	Leptinotarsa decemlineata	LDEC020995	N
HCOI01420700	Haemonchus contortus	HCOI01420700	N
Minc03634	Meloidogyne incognita	Minc03634	N
Minc04648	Meloidogyne incognita	Minc04648	N
Minc10016	Meloidogyne incognita	Minc10016	N
PMAA_054260	Penicillium marneffei	PMAA_054260	N
MDOA007633	Musca domestica	MDOA007633	N
PPAI002521	Phlebotomus papatasi	PPAI002521	N
ANCCAN_04253	Ancylostoma caninum	ANCCAN_04253	N
ANCDUO_10137	Ancylostoma duodenale	ANCDUO_10137	N
ECANG7_00770	Echinococcus canadensis	ECANG7_00770	N
EmuJ_000894800	Echinococcus multilocularis	EmuJ_000894800	N
EVEC_0000079801	Enterobius vermicularis	EVEC_0000079801	N
EVEC_0000195001	Enterobius vermicularis	EVEC_0000195001	N

Aquca_017_00248 (Aquilegia coerulea) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1145 Related TFs

Aquca_017_00248 **(Aquilegia coerulea)
AP2**