gw1.6.1665.1 (Ostreococcus RCC809)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gw1.6.1665.1 T334255_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.429 0.343
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.6.1665.1 Sox 8 74

Links

Other Sox family TFs
Other Ostreococcus RCC809 TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I 0.578
CBN25379 Caenorhabditis brenneri CBN25379 I 0.550
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.531
hmg-4 Caenorhabditis elegans WBGene00001974 N 0.509
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.508
OSTLU_18991 Ostreococcus lucimarinus OSTLU_18991 N 0.507
CBG09136 Caenorhabditis briggsae CBG09136 N 0.503
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I 0.503
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I 0.503
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I 0.503
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I 0.503
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I 0.503
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.500
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.500
PPA06513 Pristionchus pacificus PPA06513 N 0.499
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.499
NECAME_16525 Necator americanus NECAME_16525 N 0.499
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N 0.499
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.491
ETH_00031100 Eimeria tenella ETH_00031100 I 0.484
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N 0.481
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.479
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.479
CRE03995 Caenorhabditis remanei CRE03995 N 0.477
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I 0.475
CBG04066 Caenorhabditis briggsae CBG04066 N 0.474
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N 0.472
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N 0.472
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N 0.472
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N 0.472
Minc03634 Meloidogyne incognita Minc03634 N 0.468
Minc04648 Meloidogyne incognita Minc04648 N 0.468
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.468
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.468
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N 0.461
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N 0.461
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N 0.459
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.459
HmN_000028000 Hymenolepis microstoma HmN_000028000 N 0.458
estExt_fgenesh1_pg.C_2230007 Physcomitrella patens estExt_fgenesh1_pg.C_2230007 I 0.457
CJA19030 Caenorhabditis japonica CJA19030 N 0.456
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.456
tetur02g08250 Tetranychus urticae tetur02g08250 N 0.455
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N 0.453
gw1.20.66.1 Ostreococcus RCC809 gw1.20.66.1 N 0.452
Bm6643 Brugia malayi Bm6643 N 0.451
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.447
M7I_1578 Glarea lozoyensis M7I_1578 I 0.447
MBM_02410 Marssonina brunnea MBM_02410 I 0.447
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.447
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.447
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.445
1400010135 Ostreococcus tauri 1400010135 I 0.444
HNAJ_0000793101 Hymenolepis nana HNAJ_0000793101 I 0.444
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.443
L889_g29516 Steinernema feltiae L889_g29516 N 0.443
Bm8632 Brugia malayi Bm8632 N 0.440
LOAG_08062 Loa loa LOAG_08062 N 0.440
WBGene00238628 Onchocerca volvulus WBGene00238628 N 0.440
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N 0.440
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N 0.440
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N 0.440
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N 0.440
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.438
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.438
AUEXF2481DRAFT_32739 Aureobasidium subglaciale AUEXF2481DRAFT_32739 I 0.437
M437DRAFT_15090 Aureobasidium melanogenum M437DRAFT_15090 I 0.437
M438DRAFT_338286 Aureobasidium pullulans M438DRAFT_338286 I 0.437
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I 0.437
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N 0.437
RSKR_0000733200 Rhabditophanes kr3021 RSKR_0000733200 N 0.435
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.431
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.431
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.431
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.431
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N 0.430
CTHT_0053790 Chaetomium thermophilum CTHT_0053790 I 0.429
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.429
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.429
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.429
NCU02819 Neurospora crassa NCU02819 D 0.429
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N 0.429
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N 0.429
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N 0.429
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N 0.429
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I 0.429
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N 0.429
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N 0.429
HCOI01550200 Haemonchus contortus HCOI01550200 N 0.429
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N 0.429
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N 0.429
NECAME_17555 Necator americanus NECAME_17555 N 0.429
NECAME_17981 Necator americanus NECAME_17981 N 0.429
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N 0.429
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N 0.429
HCOI00417600 Haemonchus contortus HCOI00417600 N 0.427
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N 0.427
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N 0.427
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N 0.427
hmg-3 Caenorhabditis elegans WBGene00001973 N 0.426
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N 0.426
PPA02261 Pristionchus pacificus PPA02261 N 0.424
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N 0.424
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N 0.422
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N 0.422
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N 0.422
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N 0.422
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N 0.422
NECAME_10840 Necator americanus NECAME_10840 N 0.422
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N 0.422
GB47837 Apis mellifera GB47837 N 0.421
SINV22588 Solenopsis invicta SINV22588 N 0.421
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.421
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.421
EV44_g2383 Erysiphe necator EV44_g2383 I 0.420
CJA04355 Caenorhabditis japonica CJA04355 N 0.419
PFL0145c Plasmodium falciparum PFL0145c I 0.419
Phatr3_J45662 Phaeodactylum tricornutum Phatr3_J45662 I 0.419
SSLN_0000125101 Schistocephalus solidus SSLN_0000125101 N 0.419
HMPREF1541_06859 Cyphellophora europaea HMPREF1541_06859 I 0.418
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.418
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N 0.418
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N 0.418
ASU_07820 Ascaris suum ASU_07820 N 0.418
Phatr3_EG02634 Phaeodactylum tricornutum Phatr3_EG02634 N 0.417
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.417
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.417
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.417
GGTG_01518 Gaeumannomyces graminis GGTG_01518 I 0.416
MAPG_06737 Magnaporthe poae MAPG_06737 I 0.416
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.416
PBANKA_060190 Plasmodium berghei PBANKA_060190 I 0.415
PCHAS_060370 Plasmodium chabaudi PCHAS_060370 I 0.415
PKH_130170 Plasmodium knowlesi PKH_130170 I 0.415
PVX_084190 Plasmodium vivax PVX_084190 I 0.415
PY05184 Plasmodium yoelii PY05184 I 0.415
CLEC003860 Cimex lectularius CLEC003860 I 0.415
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N 0.415