CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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hmg-3
(
Caenorhabditis elegans
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
WBGene00001973
T333269_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C32F10.5
Sox
561
627
PKRATTAYIIWFNANRNSMKEDGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYK
Links
Other
Sox
family TFs
Other
Caenorhabditis elegans
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE03995
Caenorhabditis remanei
CRE03995
N
0.561
Minc01744
Meloidogyne incognita
Minc01744
N
0.560
Minc10016
Meloidogyne incognita
Minc10016
N
0.560
CBG04066
Caenorhabditis briggsae
CBG04066
N
0.559
MhA1_Contig128.frz3.gene5
Meloidogyne hapla
MhA1_Contig128.frz3.gene5
N
0.554
MhA1_Contig2971.frz3.fgene1
Meloidogyne hapla
MhA1_Contig2971.frz3.fgene1
N
0.554
EVEC_0000195001
Enterobius vermicularis
EVEC_0000195001
N
0.525
CBN25379
Caenorhabditis brenneri
CBN25379
I
0.515
SMUV_0000856901
Syphacia muris
SMUV_0000856901
N
0.513
ANCCAN_04253
Ancylostoma caninum
ANCCAN_04253
N
0.490
HNAJ_0000793101
Hymenolepis nana
HNAJ_0000793101
I
0.483
ANCDUO_10137
Ancylostoma duodenale
ANCDUO_10137
N
0.481
NECAME_16525
Necator americanus
NECAME_16525
N
0.481
hmg-4
Caenorhabditis elegans
WBGene00001974
N
0.478
NBR_0000004401
Nippostrongylus brasiliensis
NBR_0000004401
N
0.477
TASK_0000475801
Taenia asiatica
TASK_0000475801
N
0.477
ACYPI006576
Acyrthosiphon pisum
ACYPI006576
I
0.475
CBG09136
Caenorhabditis briggsae
CBG09136
N
0.472
SVUK_0001798101
Strongylus vulgaris
SVUK_0001798101
N
0.472
ECANG7_00770
Echinococcus canadensis
ECANG7_00770
N
0.466
EmuJ_000894800
Echinococcus multilocularis
EmuJ_000894800
N
0.466
PPA06513
Pristionchus pacificus
PPA06513
N
0.464
scaffold98-EXSNAP2012.51
Pristionchus exspectatus
scaffold98-EXSNAP2012.51
N
0.464
TTAC_0000692101
Hydatigera taeniaeformis
TTAC_0000692101
N
0.464
RSKR_0000171200
Rhabditophanes kr3021
RSKR_0000171200
N
0.455
RSKR_0000540800
Rhabditophanes kr3021
RSKR_0000540800
N
0.455
HPBE_0002408301
Heligmosomoides bakeri
HPBE_0002408301
I
0.454
HmN_000028000
Hymenolepis microstoma
HmN_000028000
N
0.453
Minc03634
Meloidogyne incognita
Minc03634
N
0.452
Minc04648
Meloidogyne incognita
Minc04648
N
0.452
maker-nMf.1.1.scaf04887-augustus-gene-0.6
Meloidogyne floridensis
maker-nMf.1.1.scaf04887-augustus-gene-0.6
N
0.452
MhA1_Contig400.frz3.gene18
Meloidogyne hapla
MhA1_Contig400.frz3.gene18
N
0.452
LCUP005047
Lucilia cuprina
LCUP005047
N
0.451
TsM_000111500
Taenia solium
TsM_000111500
N
0.449
CpipJ_CPIJ002953
Culex pipiens
CpipJ_CPIJ002953
N
0.448
CpipJ_CPIJ020011
Culex pipiens
CpipJ_CPIJ020011
I
0.448
CPIJ002953
Culex quinquefasciatus
CPIJ002953
N
0.448
CPIJ020011
Culex quinquefasciatus
CPIJ020011
I
0.448
RPRC006380
Rhodnius prolixus
RPRC006380
I
0.448
AAEL011425
Aedes aegypti
AAEL011425
I
0.446
HCOI01420700
Haemonchus contortus
HCOI01420700
N
0.446
HCOI02106600
Haemonchus contortus
HCOI02106600
N
0.446
GK22092
Drosophila willistoni
FBgn0224077
N
0.441
MDOA007633
Musca domestica
MDOA007633
N
0.441
PPA02261
Pristionchus pacificus
PPA02261
N
0.431
scaffold164-EXSNAP2012.19
Pristionchus exspectatus
scaffold164-EXSNAP2012.19
N
0.431
L889_g16198
Steinernema feltiae
L889_g16198
N
0.427
L892_g23618
Steinernema scapterisci
L892_g23618
N
0.427
L893_g23503
Steinernema glaseri
L893_g23503
N
0.427
L898_g7743
Steinernema monticolum
L898_g7743
N
0.427
YQE_02071
Dendroctonus ponderosae
YQE_02071
N
0.426
gw1.6.1665.1
Ostreococcus RCC809
gw1.6.1665.1
I
0.426
CJA19030
Caenorhabditis japonica
CJA19030
N
0.425
RSKR_0000733200
Rhabditophanes kr3021
RSKR_0000733200
N
0.425
RSKR_0000746900
Rhabditophanes kr3021
RSKR_0000746900
N
0.425
PMAA_054260
Talaromyces marneffei
PMAA_054260
N
0.424
PMAA_054260
Penicillium marneffei
PMAA_054260
N
0.424
L596_g16476
Steinernema carpocapsae
L596_g16476
N
0.424
LDEC020995
Leptinotarsa decemlineata
LDEC020995
N
0.421
RSKR_0000472700
Rhabditophanes kr3021
RSKR_0000472700
N
0.421
EVEC_0000079801
Enterobius vermicularis
EVEC_0000079801
N
0.419
PPAI002521
Phlebotomus papatasi
PPAI002521
N
0.415