CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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hmg-3
(
Caenorhabditis elegans
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
WBGene00001973
T333269_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable histone binding activity and nucleosome binding activity. Involved in pharynx development and regulation of embryonic development. Located in nucleus. Is expressed in germ line and gonad. Orthologous to human SSRP1 (structure specific recognition protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C32F10.5
Sox
561
627
PKRATTAYIIWFNANRNSMKEDGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYK
Links
Other
Sox
family TFs
Other
Caenorhabditis elegans
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE03995
Caenorhabditis remanei
CRE03995
N
0.561
Minc01744
Meloidogyne incognita
Minc01744
N
0.560
Minc10016
Meloidogyne incognita
Minc10016
N
0.560
CBG04066
Caenorhabditis briggsae
CBG04066
N
0.559
MhA1_Contig2971.frz3.fgene1
Meloidogyne hapla
MhA1_Contig2971.frz3.fgene1
N
0.554
MhA1_Contig128.frz3.gene5
Meloidogyne hapla
MhA1_Contig128.frz3.gene5
N
0.554
EVEC_0000195001
Enterobius vermicularis
EVEC_0000195001
N
0.525
CBN25379
Caenorhabditis brenneri
CBN25379
I
0.515
SMUV_0000856901
Syphacia muris
SMUV_0000856901
N
0.513
ANCCAN_04253
Ancylostoma caninum
ANCCAN_04253
N
0.490
HNAJ_0000793101
Hymenolepis nana
HNAJ_0000793101
I
0.483
NECAME_16525
Necator americanus
NECAME_16525
N
0.481
ANCDUO_10137
Ancylostoma duodenale
ANCDUO_10137
N
0.481
hmg-4
Caenorhabditis elegans
WBGene00001974
N
0.478
NBR_0000004401
Nippostrongylus brasiliensis
NBR_0000004401
N
0.477
TASK_0000475801
Taenia asiatica
TASK_0000475801
N
0.477
ACYPI006576
Acyrthosiphon pisum
ACYPI006576
I
0.475
CBG09136
Caenorhabditis briggsae
CBG09136
N
0.472
SVUK_0001798101
Strongylus vulgaris
SVUK_0001798101
N
0.472
EmuJ_000894800
Echinococcus multilocularis
EmuJ_000894800
N
0.466
ECANG7_00770
Echinococcus canadensis
ECANG7_00770
N
0.466
scaffold98-EXSNAP2012.51
Pristionchus exspectatus
scaffold98-EXSNAP2012.51
N
0.464
TTAC_0000692101
Hydatigera taeniaeformis
TTAC_0000692101
N
0.464
PPA06513
Pristionchus pacificus
PPA06513
N
0.464
RSKR_0000540800
Rhabditophanes kr3021
RSKR_0000540800
N
0.455
RSKR_0000171200
Rhabditophanes kr3021
RSKR_0000171200
N
0.455
HPBE_0002408301
Heligmosomoides bakeri
HPBE_0002408301
I
0.454
HmN_000028000
Hymenolepis microstoma
HmN_000028000
N
0.453
Minc03634
Meloidogyne incognita
Minc03634
N
0.452
maker-nMf.1.1.scaf04887-augustus-gene-0.6
Meloidogyne floridensis
maker-nMf.1.1.scaf04887-augustus-gene-0.6
N
0.452
Minc04648
Meloidogyne incognita
Minc04648
N
0.452
MhA1_Contig400.frz3.gene18
Meloidogyne hapla
MhA1_Contig400.frz3.gene18
N
0.452
LCUP005047
Lucilia cuprina
LCUP005047
N
0.451
TsM_000111500
Taenia solium
TsM_000111500
N
0.449
CPIJ002953
Culex quinquefasciatus
CPIJ002953
N
0.448
RPRC006380
Rhodnius prolixus
RPRC006380
I
0.448
CpipJ_CPIJ020011
Culex pipiens
CpipJ_CPIJ020011
I
0.448
CpipJ_CPIJ002953
Culex pipiens
CpipJ_CPIJ002953
N
0.448
CPIJ020011
Culex quinquefasciatus
CPIJ020011
I
0.448
HCOI01420700
Haemonchus contortus
HCOI01420700
N
0.446
AAEL011425
Aedes aegypti
AAEL011425
I
0.446
HCOI02106600
Haemonchus contortus
HCOI02106600
N
0.446
MDOA007633
Musca domestica
MDOA007633
N
0.441
GK22092
Drosophila willistoni
FBgn0224077
N
0.441
scaffold164-EXSNAP2012.19
Pristionchus exspectatus
scaffold164-EXSNAP2012.19
N
0.431
PPA02261
Pristionchus pacificus
PPA02261
N
0.431
L892_g23618
Steinernema scapterisci
L892_g23618
N
0.427
L889_g16198
Steinernema feltiae
L889_g16198
N
0.427
L893_g23503
Steinernema glaseri
L893_g23503
N
0.427
L898_g7743
Steinernema monticolum
L898_g7743
N
0.427
YQE_02071
Dendroctonus ponderosae
YQE_02071
N
0.426
gw1.6.1665.1
Ostreococcus RCC809
gw1.6.1665.1
I
0.426
CJA19030
Caenorhabditis japonica
CJA19030
N
0.425
RSKR_0000746900
Rhabditophanes kr3021
RSKR_0000746900
N
0.425
RSKR_0000733200
Rhabditophanes kr3021
RSKR_0000733200
N
0.425
L596_g16476
Steinernema carpocapsae
L596_g16476
N
0.424
PMAA_054260
Talaromyces marneffei
PMAA_054260
N
0.424
PMAA_054260
Penicillium marneffei
PMAA_054260
N
0.424
LDEC020995
Leptinotarsa decemlineata
LDEC020995
N
0.421
RSKR_0000472700
Rhabditophanes kr3021
RSKR_0000472700
N
0.421
EVEC_0000079801
Enterobius vermicularis
EVEC_0000079801
N
0.419
PPAI002521
Phlebotomus papatasi
PPAI002521
N
0.415