Bostr.29827s0238 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.29827s0238 T007643_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.833 0.960
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.833 0.960
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.708 0.840
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.708 0.840
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.708 0.840
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.693 0.820
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.693 0.820
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.685 0.820
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.685 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.29827s0238.1.p AP2 33 84

Links

Other AP2 family TFs
Other Boechera stricta TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF034 Arabidopsis thaliana AT2G44940 D 0.693
ERF035 Arabidopsis thaliana AT3G60490 D 0.685
ERF043 Arabidopsis thaliana AT4G32800 D 0.708
TINY Arabidopsis thaliana AT5G25810 D 0.833
Al_scaffold_0004_2818 Arabidopsis lyrata Al_scaffold_0004_2818 I 0.682
Al_scaffold_0006_1828 Arabidopsis lyrata Al_scaffold_0006_1828 I 0.682
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.773
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.766
ERF042 Arabidopsis thaliana AT2G25820 I 0.694
DREB3 Arabidopsis thaliana AT5G11590 I 0.774
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.709
Bo1g009990 Brassica oleracea Bo1g009990 I 0.690
Bo2g010530 Brassica oleracea Bo2g010530 I 0.759
Bo3g028500 Brassica oleracea Bo3g028500 I 0.677
Bo3g037480 Brassica oleracea Bo3g037480 I 0.681
Bo3g171090 Brassica oleracea Bo3g171090 I 0.715
Bo4g024220 Brassica oleracea Bo4g024220 I 0.687
Bo4g158810 Brassica oleracea Bo4g158810 I 0.677
Bo4g195280 Brassica oleracea Bo4g195280 I 0.687
Bo6g077080 Brassica oleracea Bo6g077080 I 0.734
Bo7g095710 Brassica oleracea Bo7g095710 I 0.833
Bo7g115860 Brassica oleracea Bo7g115860 I 0.715
Bo8g095240 Brassica oleracea Bo8g095240 I 0.728
Bo9g011210 Brassica oleracea Bo9g011210 I 0.769
Bo9g170060 Brassica oleracea Bo9g170060 I 0.779
Bra000366 Brassica rapa Bra000366 I 0.681
Bra003415 Brassica rapa Bra003415 I 0.734
Bra004878 Brassica rapa Bra004878 I 0.687
Bra007539 Brassica rapa Bra007539 I 0.728
Bra008952 Brassica rapa Bra008952 I 0.779
Bra009862 Brassica rapa Bra009862 I 0.833
Bra011383 Brassica rapa Bra011383 I 0.690
Bra023026 Brassica rapa Bra023026 I 0.677
Bra023332 Brassica rapa Bra023332 I 0.762
Bra034273 Brassica rapa Bra034273 I 0.694
Bra034535 Brassica rapa Bra034535 I 0.715
Bra036552 Brassica rapa Bra036552 I 0.769
Bra037041 Brassica rapa Bra037041 I 0.716
Bra040333 Brassica rapa Bra040333 I 0.687
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.714
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.693
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.685
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.774
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.751
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.764
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.678
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.766
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.770
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.751
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.770
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.712
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.772
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.711
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.678
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.762
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.752
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.762
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.726
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.688
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.746
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.699
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.749
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.776
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.678
MTR_5g012910 Medicago truncatula MTR_5g012910 I 0.678
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.746
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.757
OB04G27840 Oryza brachyantha OB04G27840 I 0.686
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.709
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.709
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.709
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.709
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.709
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.709
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.709
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.709
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.709
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.709
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.709
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.688
OS02G0656600 Oryza sativa OS02G0656600 I 0.709
OS04G0549700 Oryza sativa OS04G0549700 I 0.709
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.772
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.701
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.699
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.699
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.730
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.761
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.750
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.776
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.693
POPTR_0001s18800 Populus trichocarpa POPTR_0001s18800 I 0.680
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.693
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.697
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.772
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.697
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.694
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.681
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.709
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.708
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.711
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.711
Si010703m.g Setaria italica Si010703m.g I 0.709
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.776
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.700
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.730
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.710
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.772
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.699
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.699
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.693
TCM_005639 Theobroma cacao TCM_005639 I 0.692
TCM_014892 Theobroma cacao TCM_014892 I 0.683
TCM_015930 Theobroma cacao TCM_015930 I 0.682
TCM_028851 Theobroma cacao TCM_028851 I 0.713
TCM_037194 Theobroma cacao TCM_037194 I 0.772
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.709
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.709
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.699
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.752
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.730
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.752
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.772
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.700
VIT_14s0006g02290 Vitis vinifera VIT_14s0006g02290 I 0.709
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.754
Ca_01908 Cicer arietinum Ca_01908 I 0.746
Ca_12765 Cicer arietinum Ca_12765 I 0.678
Ca_14911 Cicer arietinum Ca_14911 I 0.748
Ca_18948 Cicer arietinum Ca_18948 I 0.705
Ca_28185 Cicer arietinum Ca_28185 I 0.746
Cla012859 Citrullus lanatus Cla012859 I 0.687
Cla015715 Citrullus lanatus Cla015715 I 0.717
Cla021417 Citrullus lanatus Cla021417 I 0.782
Cla022553 Citrullus lanatus Cla022553 I 0.783
Pm005151 Prunus mume Pm005151 I 0.772
Pm013463 Prunus mume Pm013463 I 0.687
Pm017610 Prunus mume Pm017610 I 0.697
Pm023417 Prunus mume Pm023417 I 0.694
29794.m003381 Ricinus communis 29794.m003381 I 0.772
30146.m003535 Ricinus communis 30146.m003535 I 0.706
30174.m008790 Ricinus communis 30174.m008790 I 0.691
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.680
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.772
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.772
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.694
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.694
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.686
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.680
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.687
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.783
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.784
Cucsa.359390 Cucumis sativus Cucsa.359390 I 0.687
mgf022971m Mimulus guttatus mgf022971m I 0.719
mgf024703m Mimulus guttatus mgf024703m I 0.769
mgf024816m Mimulus guttatus mgf024816m I 0.693
mgf026339m Mimulus guttatus mgf026339m I 0.752
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.693
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.681
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.774
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.693
Bostr.26326s0067 Boechera stricta Bostr.26326s0067 I 0.685
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.708
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.693
Cagra.21659s0001 Capsella grandiflora Cagra.21659s0001 I 0.691
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.683
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.708
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.833
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.774
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.708
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.683
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.693
Carubv10024051m.g Capsella rubella Carubv10024051m.g I 0.691
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.772
Ciclev10021740m.g Citrus clementina Ciclev10021740m.g I 0.677
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.683
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.776
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.763
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.754
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.714
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.689
evm.TU.supercontig_109.32 Carica papaya evm.TU.supercontig_109.32 I 0.683
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.680
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.746
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.681
gene04810-v1.0-hybrid Fragaria vesca gene04810-v1.0-hybrid I 0.678
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.772
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.677
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.682
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.746
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.683
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.682
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.693
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.681
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.759
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.713
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.694
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.772
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.703
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.703
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.692
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.692
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.729
Lus10034949.g Linum usitatissimum Lus10034949.g I 0.677
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.733
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.700
MDP0000174352 Malus domestica MDP0000174352 I 0.749
MDP0000241650 Malus domestica MDP0000241650 I 0.772
MDP0000242611 Malus domestica MDP0000242611 I 0.772
MDP0000790788 Malus domestica MDP0000790788 I 0.789
orange1.1g024791m.g Citrus sinensis orange1.1g024791m.g I 0.677
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.772
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.683
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.709
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.709
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.694
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.697
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.772
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.705
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.697
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.769
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.728
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.776
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.715
PK25970.1 Cannabis sativa PK25970.1 I 0.678
PK28082.1 Cannabis sativa PK28082.1 I 0.772
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.732
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.748
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.699
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.718
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.678
LjT43F20.80.nd Lotus japonicus LjT43F20.80.nd I 0.687