Carubv10010891m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10010891m.g T007858_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.782 0.900
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.781 0.900
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.781 0.900
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.781 0.880
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.781 0.880
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.779 0.900
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.779 0.900
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.779 0.900
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.779 0.900
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.779 0.960
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.779 0.960
RAP2-9
M06633_2.00 		Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a 		0.760 0.900
RAP2-9
M06634_2.00 		Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a 		0.760 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010891m AP2 31 82

Links

Other AP2 family TFs
Other Capsella rubella TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F3A4.140 Arabidopsis thaliana AT3G50060 D
MYB44 Arabidopsis thaliana AT5G67300 D
OS02G0187700 Oryza sativa OS02G0187700 D
PK07741.1 Cannabis sativa PK07741.1 D
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I
BGIOSGA030245 Oryza indica BGIOSGA030245 I
Bo2g167960 Brassica oleracea Bo2g167960 I
Bo7g063830 Brassica oleracea Bo7g063830 I
Bra012149 Brassica rapa Bra012149 I
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I
GLYMA01G26650 Glycine max GLYMA01G26650 I
GLYMA02G42030 Glycine max GLYMA02G42030 I
GLYMA02G43280 Glycine max GLYMA02G43280 I
GLYMA03G15810 Glycine max GLYMA03G15810 I
GLYMA04G03910 Glycine max GLYMA04G03910 I
GLYMA06G04010 Glycine max GLYMA06G04010 I
GLYMA14G06320 Glycine max GLYMA14G06320 I
GLYMA14G06870 Glycine max GLYMA14G06870 I
GLYMA17G36370 Glycine max GLYMA17G36370 I
GRMZM2G050550 Zea mays GRMZM2G050550 I
GRMZM2G087955 Zea mays GRMZM2G087955 I
GRMZM2G145444 Zea mays GRMZM2G145444 I
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I
LPERR02G05810 Leersia perrieri LPERR02G05810 I
LPERR09G00910 Leersia perrieri LPERR09G00910 I
MLOC_64817 Hordeum vulgare MLOC_64817 I
MLOC_7426 Hordeum vulgare MLOC_7426 I
MTR_4g019370 Medicago truncatula MTR_4g019370 I
MTR_5g082910 Medicago truncatula MTR_5g082910 I
OB09G10200 Oryza brachyantha OB09G10200 I
OBART09G00310 Oryza barthii OBART09G00310 I
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I
OMERI02G07700 Oryza meridionalis OMERI02G07700 I
OMERI08G05160 Oryza meridionalis OMERI08G05160 I
ONIVA02G08210 Oryza nivara ONIVA02G08210 I
ONIVA09G00250 Oryza nivara ONIVA09G00250 I
OPUNC02G05820 Oryza punctata OPUNC02G05820 I
OPUNC06G19910 Oryza punctata OPUNC06G19910 I
OPUNC12G06260 Oryza punctata OPUNC12G06260 I
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I
OS09G0106700 Oryza sativa OS09G0106700 I
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I
Sb02g013010 Sorghum bicolor Sb02g013010 I
Sb04g005940 Sorghum bicolor Sb04g005940 I
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I
Si017917m.g Setaria italica Si017917m.g I
Si032789m.g Setaria italica Si032789m.g I
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I
TCM_021796 Theobroma cacao TCM_021796 I
TCM_033907 Theobroma cacao TCM_033907 I
TCM_042474 Theobroma cacao TCM_042474 I
TCM_042629 Theobroma cacao TCM_042629 I
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I
Ca_01522 Cicer arietinum Ca_01522 I
Cla014191 Citrullus lanatus Cla014191 I
Cla018417 Citrullus lanatus Cla018417 I
Cla021015 Citrullus lanatus Cla021015 I
Cla022889 Citrullus lanatus Cla022889 I
Pm002576 Prunus mume Pm002576 I
Pm005220 Prunus mume Pm005220 I
Pm018862 Prunus mume Pm018862 I
27798.m000612 Ricinus communis 27798.m000612 I
29801.m003096 Ricinus communis 29801.m003096 I
29814.m000736 Ricinus communis 29814.m000736 I
30170.m013927 Ricinus communis 30170.m013927 I
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I
cassava16103.m1 Manihot esculenta cassava16103.m1 I
cassava41257.m1 Manihot esculenta cassava41257.m1 I
cassava46434.m1 Manihot esculenta cassava46434.m1 I
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I
cassava8939.m1 Manihot esculenta cassava8939.m1 I
Cucsa.066910 Cucumis sativus Cucsa.066910 I
Cucsa.102710 Cucumis sativus Cucsa.102710 I
Cucsa.123440 Cucumis sativus Cucsa.123440 I
Cucsa.232630 Cucumis sativus Cucsa.232630 I
Cucsa.352560 Cucumis sativus Cucsa.352560 I
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I
mgf003084m Mimulus guttatus mgf003084m I
mgf006151m Mimulus guttatus mgf006151m I
mgf015566m Mimulus guttatus mgf015566m I
mgf018580m Mimulus guttatus mgf018580m I
mgf025567m Mimulus guttatus mgf025567m I
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I
Carubv10027659m.g Capsella rubella Carubv10027659m.g I
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I
Gorai.009G275100 Gossypium raimondii Gorai.009G275100 I
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I
Lus10014103.g Linum usitatissimum Lus10014103.g I
Lus10021762.g Linum usitatissimum Lus10021762.g I
Lus10028250.g Linum usitatissimum Lus10028250.g I
Lus10032764.g Linum usitatissimum Lus10032764.g I
Lus10040239.g Linum usitatissimum Lus10040239.g I
MDP0000203733 Malus domestica MDP0000203733 I
MDP0000284922 Malus domestica MDP0000284922 I
MDP0000319124 Malus domestica MDP0000319124 I
MDP0000477900 Malus domestica MDP0000477900 I
MDP0000478512 Malus domestica MDP0000478512 I
MDP0000480596 Malus domestica MDP0000480596 I
MDP0000641708 Malus domestica MDP0000641708 I
MDP0000784297 Malus domestica MDP0000784297 I
MDP0000823270 Malus domestica MDP0000823270 I
MDP0000894463 Malus domestica MDP0000894463 I
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I
Pavir.J23512 Panicum virgatum Pavir.J23512 I
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I
PK01153.1 Cannabis sativa PK01153.1 I
PK12959.1 Cannabis sativa PK12959.1 I
PK16550.1 Cannabis sativa PK16550.1 I
PK29071.1 Cannabis sativa PK29071.1 I
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I