LjSGA_147935.1 (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 LjSGA_147935.1 T010314_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.721 0.936
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.713 0.915
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.693 0.915
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_147935.1 AP2 37 85

Links

Other AP2 family TFs
Other Lotus japonicus TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.E03895 Eucalyptus grandis Eucgr.E03895 N 0.000
Lus10000539.g Linum usitatissimum Lus10000539.g N 0.000
Gorai.010G249400 Gossypium raimondii Gorai.010G249400 N 0.000
Gorai.009G184100 Gossypium raimondii Gorai.009G184100 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.000
evm.TU.supercontig_27.254 Carica papaya evm.TU.supercontig_27.254 N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.000
Eucgr.D01435 Eucalyptus grandis Eucgr.D01435 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.000
Ciclev10014811m.g Citrus clementina Ciclev10014811m.g N 0.000
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
mgf007403m Mimulus guttatus mgf007403m N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.000
chr6.LjT16B20.120.nc Lotus japonicus chr6.LjT16B20.120.nc N 0.000
chr4.CM0288.500.nc Lotus japonicus chr4.CM0288.500.nc N 0.000
PK09018.1 Cannabis sativa PK09018.1 N 0.000
PK04573.1 Cannabis sativa PK04573.1 N 0.000
SapurV1A.0823s0110 Salix purpurea SapurV1A.0823s0110 N 0.000
SapurV1A.0359s0250 Salix purpurea SapurV1A.0359s0250 N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
Cucsa.044690 Cucumis sativus Cucsa.044690 N 0.000
orange1.1g008984m.g Citrus sinensis orange1.1g008984m.g N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
MDP0000284679 Malus domestica MDP0000284679 N 0.000
MDP0000254936 Malus domestica MDP0000254936 N 0.000
MDP0000205236 Malus domestica MDP0000205236 N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
Lus10017554.g Linum usitatissimum Lus10017554.g N 0.000
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.000
PGSC0003DMG400008442 Solanum tuberosum PGSC0003DMG400008442 N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
Solyc04g014830.1 Solanum lycopersicum Solyc04g014830.1 N 0.000
PRUPE_ppa003910mg Prunus persica PRUPE_ppa003910mg N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
POPTR_0016s01110 Populus trichocarpa POPTR_0016s01110 N 0.000
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.000
POPTR_0006s01720 Populus trichocarpa POPTR_0006s01720 N 0.000
PGSC0003DMG400023556 Solanum tuberosum PGSC0003DMG400023556 N 0.000
PGSC0003DMG400013356 Solanum tuberosum PGSC0003DMG400013356 N 0.000
Solyc11g012510.1 Solanum lycopersicum Solyc11g012510.1 N 0.000
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.000
OMERI10G05450 Oryza meridionalis OMERI10G05450 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
GLYMA17G01150 Glycine max GLYMA17G01150 N 0.000
GLYMA15G12320 Glycine max GLYMA15G12320 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
GLYMA09G01440 Glycine max GLYMA09G01440 N 0.000
GLYMA07G39650 Glycine max GLYMA07G39650 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.000
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
27613.m000642 Ricinus communis 27613.m000642 N 0.000
27529.m000047 Ricinus communis 27529.m000047 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
Pm012494 Prunus mume Pm012494 N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
Cla014623 Citrullus lanatus Cla014623 N 0.000
Cla001429 Citrullus lanatus Cla001429 N 0.000
Ca_20223 Cicer arietinum Ca_20223 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
TCM_030393 Theobroma cacao TCM_030393 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000