im:7142702 (Oryzias latipes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSORLG00000010488 T104867_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.825 0.965
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.825 0.965
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.806 0.930
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.806 0.930
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.806 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000013143 C2H2 ZF 450 471
ENSORLP00000013143 C2H2 ZF 477 499
ENSORLP00000013143 C2H2 ZF 760 782
ENSORLP00000013143 C2H2 ZF 788 810
ENSORLP00000013143 C2H2 ZF 818 841

Links

Other C2H2 ZF family TFs
Other Oryzias latipes TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.000
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.000
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.000
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.000
Cagra.7055s0004 Capsella grandiflora Cagra.7055s0004 N 0.000
Carubv10008830m.g Capsella rubella Carubv10008830m.g N 0.000
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.000
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.000
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.000
27613.m000642 Ricinus communis 27613.m000642 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.000
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.000
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
MDP0000205236 Malus domestica MDP0000205236 N 0.000
MDP0000284679 Malus domestica MDP0000284679 N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.000
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.000
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.000
PK09018.1 Cannabis sativa PK09018.1 N 0.000
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N 0.000
MTR_5g094450 Medicago truncatula MTR_5g094450 N 0.000
PAT1 Arabidopsis thaliana AT5G48150 N 0.000
Bo6g022330 Brassica oleracea Bo6g022330 N 0.000
Bo7g089080 Brassica oleracea Bo7g089080 N 0.000
Bo9g009260 Brassica oleracea Bo9g009260 N 0.000
Bra018860 Brassica rapa Bra018860 N 0.000
Bra020715 Brassica rapa Bra020715 N 0.000
Bra026077 Brassica rapa Bra026077 N 0.000
Bra036185 Brassica rapa Bra036185 N 0.000
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.000
GLYMA02G46730 Glycine max GLYMA02G46730 N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
GLYMA14G01960 Glycine max GLYMA14G01960 N 0.000
GLYMA18G09030 Glycine max GLYMA18G09030 N 0.000
MTR_3g056110 Medicago truncatula MTR_3g056110 N 0.000
SCL5 Arabidopsis thaliana AT1G50600 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.000
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.000
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.000
Ca_09696 Cicer arietinum Ca_09696 N 0.000
Ca_13855 Cicer arietinum Ca_13855 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000