YBX2 (Equus caballus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSECAG00000009996 T164528_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.985 0.985
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.985 0.985
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.985 0.985
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.985 0.985
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.803 0.803
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000007975 CSD 19 88

Links

Other CSD family TFs
Other Equus caballus TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG23380 Caenorhabditis briggsae CBG23380 D 0.000
nhr-154 Caenorhabditis elegans WBGene00007547 D 0.000
HCOI01525900 Haemonchus contortus HCOI01525900 I 0.000
scaffold572-EXSNAP2012.7 Pristionchus exspectatus scaffold572-EXSNAP2012.7 I 0.000
HPBE_0000704501 Heligmosomoides bakeri HPBE_0000704501 I 0.000
HPBE_0001246601 Heligmosomoides bakeri HPBE_0001246601 I 0.000
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I 0.000
L596_g27472 Steinernema carpocapsae L596_g27472 I 0.000
L889_g1557 Steinernema feltiae L889_g1557 I 0.000
L892_g17612 Steinernema scapterisci L892_g17612 I 0.000
L892_g4169 Steinernema scapterisci L892_g4169 I 0.000
L893_g28857 Steinernema glaseri L893_g28857 I 0.000
L893_g3565 Steinernema glaseri L893_g3565 I 0.000
L898_g9866 Steinernema monticolum L898_g9866 I 0.000
NECAME_01944 Necator americanus NECAME_01944 I 0.000
NECAME_08394 Necator americanus NECAME_08394 I 0.000
PEQ_0000722401 Parascaris equorum PEQ_0000722401 I 0.000
scaffold384-EXSNAP2012.4 Pristionchus exspectatus scaffold384-EXSNAP2012.4 I 0.000
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I 0.000
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I 0.000
scaffold552-EXSNAP2012.17 Pristionchus exspectatus scaffold552-EXSNAP2012.17 I 0.000
scaffold552-EXSNAP2012.18 Pristionchus exspectatus scaffold552-EXSNAP2012.18 I 0.000
CBG10855 Caenorhabditis briggsae CBG10855 I 0.000
PPA24481 Pristionchus pacificus PPA24481 I 0.000
CBN24827 Caenorhabditis brenneri CBN24827 I 0.000
CBN28497 Caenorhabditis brenneri CBN28497 I 0.000
CJA08896 Caenorhabditis japonica CJA08896 I 0.000
CRE00149 Caenorhabditis remanei CRE00149 I 0.000
CRE09109 Caenorhabditis remanei CRE09109 I 0.000
CRE27050 Caenorhabditis remanei CRE27050 I 0.000
LOAG_16377 Loa loa LOAG_16377 I 0.000
Ppa-nhr-120 Pristionchus pacificus PPA00183 I 0.000
PPA21777 Pristionchus pacificus PPA21777 I 0.000
HCOI01292200 Haemonchus contortus HCOI01292200 I 0.000
PPA29597 Pristionchus pacificus PPA29597 I 0.000
nhr-120 Caenorhabditis elegans WBGene00003710 I 0.000
WBGene00240403 Onchocerca volvulus WBGene00240403 I 0.000
ANCCAN_09880 Ancylostoma caninum ANCCAN_09880 I 0.000
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I 0.000
ASU_02755 Ascaris suum ASU_02755 I 0.000
ASU_03657 Ascaris suum ASU_03657 I 0.000
BTMF_0000941401 Brugia timori BTMF_0000941401 I 0.000
EEL_0000989101 Elaeophora elaphi EEL_0000989101 I 0.000