Eucgr.A00193 (Eucalyptus grandis)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Eucgr.A00193 T196511_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.842 0.917
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.822 0.917
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.822 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.A00193.1 GATA 105 140

Links

Other GATA family TFs
Other Eucalyptus grandis TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.000
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.000
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.000
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.000
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.000
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.000
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.000
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.000
MDP0000669451 Malus domestica MDP0000669451 I 0.000
Pm014329 Prunus mume Pm014329 I 0.000
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.000
Ca_13295 Cicer arietinum Ca_13295 I 0.000
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.000
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.000
29692.m000540 Ricinus communis 29692.m000540 N 0.000
28677.m000055 Ricinus communis 28677.m000055 N 0.000
Pm006304 Prunus mume Pm006304 N 0.000
mgf008289m Mimulus guttatus mgf008289m N 0.000
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.000
mgf025772m Mimulus guttatus mgf025772m N 0.000
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.000
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.000
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N 0.000
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.000
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.000
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.000
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.000
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.000
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.000
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.000
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.000
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.000
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.000
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.000
SLR1 Oryza indica BGIOSGA013420 N 0.000
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.000
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.000
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.000
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.000
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.000
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.000
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.000
OB03G38380 Oryza brachyantha OB03G38380 N 0.000
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.000
OLONG_002563 Oryza longistaminata OLONG_002563 N 0.000
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.000
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.000
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.000
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.000
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.000
SLR1 Oryza sativa OS03G0707600 N 0.000
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.000
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.000
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.000
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.000
Si039400m.g Setaria italica Si039400m.g N 0.000
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.000
TCM_019165 Theobroma cacao TCM_019165 N 0.000
Traes_4AL_77F4CC833 Triticum aestivum Traes_4AL_77F4CC833 N 0.000
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.000
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.000
TRIUR3_18790 Triticum urartu TRIUR3_18790 N 0.000