Traes_1AL_0BE456AC0 (Triticum aestivum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Traes_1AL_0BE456AC0 T224094_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.849 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.849 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.849 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.844 0.857
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.844 0.857
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_1AL_0BE456AC0.1 Homeodomain 31 90

Links

Other Homeodomain family TFs
Other Triticum aestivum TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
S1FA3 Arabidopsis thaliana AT3G09735 D
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I
S1FA2 Arabidopsis thaliana AT2G37120 I
S1FA1 Arabidopsis thaliana AT3G53370 I
Bo00703s130 Brassica oleracea Bo00703s130 I
Bo00703s150 Brassica oleracea Bo00703s150 I
Bo1g144300 Brassica oleracea Bo1g144300 I
Bo3g061880 Brassica oleracea Bo3g061880 I
Bo5g138130 Brassica oleracea Bo5g138130 I
Bo6g067310 Brassica oleracea Bo6g067310 I
Bra003132 Brassica rapa Bra003132 I
Bra029784 Brassica rapa Bra029784 I
Bra034084 Brassica rapa Bra034084 I
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I
GLYMA03G33640 Glycine max GLYMA03G33640 I
GLYMA10G05790 Glycine max GLYMA10G05790 I
GLYMA13G20160 Glycine max GLYMA13G20160 I
GLYMA19G36350 Glycine max GLYMA19G36350 I
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I
LPERR04G08410 Leersia perrieri LPERR04G08410 I
MTR_7g100880 Medicago truncatula MTR_7g100880 I
MTR_7g100890 Medicago truncatula MTR_7g100890 I
MTR_7g100905 Medicago truncatula MTR_7g100905 I
OB04G18770 Oryza brachyantha OB04G18770 I
OB04G18780 Oryza brachyantha OB04G18780 I
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I
TCM_022113 Theobroma cacao TCM_022113 I
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I
Ca_12027 Cicer arietinum Ca_12027 I
Ca_12028 Cicer arietinum Ca_12028 I
Cla018106 Citrullus lanatus Cla018106 I
Cla018556 Citrullus lanatus Cla018556 I
29805.m001471 Ricinus communis 29805.m001471 I
cassava45931.m1 Manihot esculenta cassava45931.m1 I
Cucsa.124240 Cucumis sativus Cucsa.124240 I
Cucsa.307040 Cucumis sativus Cucsa.307040 I
mgf000337m Mimulus guttatus mgf000337m I
mgf004062m Mimulus guttatus mgf004062m I
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I
Carubv10015035m.g Capsella rubella Carubv10015035m.g I
Carubv10018341m.g Capsella rubella Carubv10018341m.g I
Carubv10025429m.g Capsella rubella Carubv10025429m.g I
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I
Lus10015073.g Linum usitatissimum Lus10015073.g I
Lus10023177.g Linum usitatissimum Lus10023177.g I
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I
PK08477.1 Cannabis sativa PK08477.1 I
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I
BGIOSGA015142 Oryza indica BGIOSGA015142 N
BGIOSGA015143 Oryza indica BGIOSGA015143 N
BGIOSGA015145 Oryza indica BGIOSGA015145 N
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N
GRMZM2G056929 Zea mays GRMZM2G056929 N
GRMZM2G147424 Zea mays GRMZM2G147424 N
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N
LPERR04G08400 Leersia perrieri LPERR04G08400 N
MLOC_67411 Hordeum vulgare MLOC_67411 N
OBART04G11650 Oryza barthii OBART04G11650 N
OBART04G11660 Oryza barthii OBART04G11660 N
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N
OMERI04G10270 Oryza meridionalis OMERI04G10270 N
OMERI04G10280 Oryza meridionalis OMERI04G10280 N
ONIVA04G09610 Oryza nivara ONIVA04G09610 N
ONIVA04G09620 Oryza nivara ONIVA04G09620 N
OPUNC04G09660 Oryza punctata OPUNC04G09660 N
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N
S1FA2 Oryza sativa OS04G0408700 N
OS04G0408900 Oryza sativa OS04G0408900 N
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N
Sb06g015340 Sorghum bicolor Sb06g015340 N
Si011030m.g Setaria italica Si011030m.g N
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N
Pm002519 Prunus mume Pm002519 N
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N
MDP0000276000 Malus domestica MDP0000276000 N
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N