MBD10 (Arabidopsis lyrata)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 fgenesh1_pm.C_scaffold_1001305 T260570_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_1001305 MBD 4 77

Links

Other MBD family TFs
Other Arabidopsis lyrata TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N 0.716
Cla012920 Citrullus lanatus Cla012920 N 0.743
29841.m002855 Ricinus communis 29841.m002855 N 0.757
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.743
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.757
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.740
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N 0.730
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.959
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 0.959
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.959
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.707
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.833
Ca_19192 Cicer arietinum Ca_19192 N 0.797
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.770
MDP0000152128 Malus domestica MDP0000152128 N 0.703
MDP0000301302 Malus domestica MDP0000301302 N 0.707
MDP0000375866 Malus domestica MDP0000375866 N 0.703
MDP0000574053 Malus domestica MDP0000574053 N 0.703
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.703
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.986
PK04144.1 Cannabis sativa PK04144.1 N 0.730
PK24888.1 Cannabis sativa PK24888.1 N 0.784
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.746
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.716
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.703
MBD11 Arabidopsis thaliana AT3G15790 N 0.753
Bo5g020780 Brassica oleracea Bo5g020780 N 0.737
Bo8g066360 Brassica oleracea Bo8g066360 N 0.959
Bo8g106130 Brassica oleracea Bo8g106130 N 0.824
Bra016665 Brassica rapa Bra016665 N 0.959
Bra021136 Brassica rapa Bra021136 N 0.730
Bra026773 Brassica rapa Bra026773 N 0.778
Bra027207 Brassica rapa Bra027207 N 0.743
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.740
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.716
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.716
MBD10 Arabidopsis thaliana AT1G15340 N 0.986
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.716
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.753
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.781
MTR_4g010210 Medicago truncatula MTR_4g010210 N 0.724
POPTR_0006s06690 Populus trichocarpa POPTR_0006s06690 N 0.732
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.716
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.781
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N 0.712
TCM_027169 Theobroma cacao TCM_027169 N 0.764
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.792
Ca_06682 Cicer arietinum Ca_06682 N 0.726