Bra003413 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra003413 T267720_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003413.1-P Myb 11 58
Bra003413.1-P Myb 65 109

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008784 Ricinus communis 30174.m008784 N 0.807
Bostr.13158s0046 Boechera stricta Bostr.13158s0046 N 0.840
Bostr.13158s0042 Boechera stricta Bostr.13158s0042 N 0.909
Aquca_081_00025 Aquilegia coerulea Aquca_081_00025 N 0.753
Aquca_002_00029 Aquilegia coerulea Aquca_002_00029 N 0.737
mgf019330m Mimulus guttatus mgf019330m N 0.832
mgf004314m Mimulus guttatus mgf004314m N 0.675
Cucsa.121070 Cucumis sativus Cucsa.121070 N 0.825
Cucsa.094180 Cucumis sativus Cucsa.094180 N 0.684
cassava19913.m1 Manihot esculenta cassava19913.m1 N 0.793
cassava17368.m1 Manihot esculenta cassava17368.m1 N 0.760
Cagra.3527s0008 Capsella grandiflora Cagra.3527s0008 N 0.884
Pm031387 Prunus mume Pm031387 N 0.796
Pm019530 Prunus mume Pm019530 N 0.796
Pm017596 Prunus mume Pm017596 N 0.804
Cla010897 Citrullus lanatus Cla010897 N 0.709
Cla006831 Citrullus lanatus Cla006831 N 0.815
Ca_19557 Cicer arietinum Ca_19557 N 0.702
Ca_18954 Cicer arietinum Ca_18954 N 0.791
DUO1 Vitis vinifera VIT_15s0021g02040 N 0.807
Traes_2DL_912473A86 Triticum aestivum Traes_2DL_912473A86 N 0.754
Traes_2BL_855A1170C Triticum aestivum Traes_2BL_855A1170C N 0.780
MDP0000319634 Malus domestica MDP0000319634 N 0.804
LjT36B17.50.nd Lotus japonicus LjT36B17.50.nd N 0.830
Thhalv10006475m.g Eutrema salsugineum Thhalv10006475m.g N 0.869
SapurV1A.0490s0170 Salix purpurea SapurV1A.0490s0170 N 0.832
SapurV1A.0033s0200 Salix purpurea SapurV1A.0033s0200 N 0.851
Pavir.J35399 Panicum virgatum Pavir.J35399 N 0.783
Pavir.J30013 Panicum virgatum Pavir.J30013 N 0.783
Pavir.Gb01130 Panicum virgatum Pavir.Gb01130 N 0.791
Pavir.Fb01900 Panicum virgatum Pavir.Fb01900 N 0.786
Pavir.Fa00479 Panicum virgatum Pavir.Fa00479 N 0.755
orange1.1g038795m.g Citrus sinensis orange1.1g038795m.g N 0.807
Traes_2AL_0A21FB42C Triticum aestivum Traes_2AL_0A21FB42C N 0.780
MDP0000237596 Malus domestica MDP0000237596 N 0.804
Lus10009780.g Linum usitatissimum Lus10009780.g N 0.731
Gorai.004G165400 Gossypium raimondii Gorai.004G165400 N 0.777
Gorai.003G112700 Gossypium raimondii Gorai.003G112700 N 0.689
gene12261-v1.0-hybrid Fragaria vesca gene12261-v1.0-hybrid N 0.759
gene04800-v1.0-hybrid Fragaria vesca gene04800-v1.0-hybrid N 0.776
evm.TU.supercontig_37.96 Carica papaya evm.TU.supercontig_37.96 N 0.824
Eucgr.E01581 Eucalyptus grandis Eucgr.E01581 N 0.796
Ciclev10021345m.g Citrus clementina Ciclev10021345m.g N 0.807
Carubv10019483m.g Capsella rubella Carubv10019483m.g N 0.884
GLYMA12G37026 Glycine max GLYMA12G37026 N 0.718
OGLUM04G20730 Oryza glumaepatula OGLUM04G20730 N 0.776
OBART04G20790 Oryza barthii OBART04G20790 N 0.776
OB04G27810 Oryza brachyantha OB04G27810 N 0.776
MTR_8g006470 Medicago truncatula MTR_8g006470 N 0.783
MTR_4g029540 Medicago truncatula MTR_4g029540 N 0.752
LPERR04G16870 Leersia perrieri LPERR04G16870 N 0.674
GSMUA_Achr1G01660_001 Musa acuminata GSMUA_Achr1G01660_001 N 0.722
GRMZM2G311059 Zea mays GRMZM2G311059 N 0.737
GRMZM2G105137 Zea mays GRMZM2G105137 N 0.775
GRMZM2G046443 Zea mays GRMZM2G046443 N 0.718
OMERI04G17240 Oryza meridionalis OMERI04G17240 N 0.776
GLYMA09G00371 Glycine max GLYMA09G00371 N 0.721
GLYMA07G14480 Glycine max GLYMA07G14480 N 0.768
GLYMA03G26830 Glycine max GLYMA03G26830 N 0.777
DUO1 Arabidopsis lyrata fgenesh2_kg.5__2511__AT3G60460.1 N 0.909
BRADI5G17600 Brachypodium distachyon BRADI5G17600 N 0.751
Bra007536 Brassica rapa Bra007536 N 0.860
Bo8g095200 Brassica oleracea Bo8g095200 N 0.860
Bo6g077030 Brassica oleracea Bo6g077030 N 0.900
BGIOSGA016880 Oryza indica BGIOSGA016880 N 0.776
DUO1 Arabidopsis thaliana AT3G60460 N 0.909
PRUPE_ppa020326mg Prunus persica PRUPE_ppa020326mg N 0.804
TCM_014872 Theobroma cacao TCM_014872 N 0.717
TCM_005653 Theobroma cacao TCM_005653 N 0.824
Solyc10g019260.1 Solanum lycopersicum Solyc10g019260.1 N 0.780
Solyc01g090530.1 Solanum lycopersicum Solyc01g090530.1 N 0.818
Si015815m.g Setaria italica Si015815m.g N 0.752
Si012032m.g Setaria italica Si012032m.g N 0.791
SELMODRAFT_118852 Selaginella moellendorffii SELMODRAFT_118852 N 0.677
SELMODRAFT_116971 Selaginella moellendorffii SELMODRAFT_116971 N 0.677
Sb07g027160 Sorghum bicolor Sb07g027160 N 0.735
Sb06g024510 Sorghum bicolor Sb06g024510 N 0.747
AMTR_s00111p00072510 Amborella trichopoda AMTR_s00111p00072510 N 0.723
PRUPE_ppa016603mg Prunus persica PRUPE_ppa016603mg N 0.796
POPTR_0014s05420 Populus trichocarpa POPTR_0014s05420 N 0.824
POPTR_0014s05370 Populus trichocarpa POPTR_0014s05370 N 0.824
POPTR_0002s14180 Populus trichocarpa POPTR_0002s14180 N 0.854
PGSC0003DMG400025720 Solanum tuberosum PGSC0003DMG400025720 N 0.815
ORUFI04G22380 Oryza rufipogon ORUFI04G22380 N 0.776
ORGLA04G0178400 Oryza glaberrima ORGLA04G0178400 N 0.776
OPUNC04G18480 Oryza punctata OPUNC04G18480 N 0.776
ONIVA04G19030 Oryza nivara ONIVA04G19030 N 0.776