Pavir.Fa00479 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fa00479 T289176_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00479.1.p Myb 18 65
Pavir.Fa00479.1.p Myb 72 116

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008784 Ricinus communis 30174.m008784 N 0.792
Bostr.13158s0046 Boechera stricta Bostr.13158s0046 N 0.782
Bostr.13158s0042 Boechera stricta Bostr.13158s0042 N 0.755
Aquca_081_00025 Aquilegia coerulea Aquca_081_00025 N 0.714
Aquca_002_00029 Aquilegia coerulea Aquca_002_00029 N 0.733
mgf019330m Mimulus guttatus mgf019330m N 0.768
mgf004314m Mimulus guttatus mgf004314m N 0.689
Cucsa.121070 Cucumis sativus Cucsa.121070 N 0.759
Cucsa.094180 Cucumis sativus Cucsa.094180 N 0.706
cassava19913.m1 Manihot esculenta cassava19913.m1 N 0.748
cassava17368.m1 Manihot esculenta cassava17368.m1 N 0.751
Cagra.3527s0008 Capsella grandiflora Cagra.3527s0008 N 0.779
Pm031387 Prunus mume Pm031387 N 0.793
Pm019530 Prunus mume Pm019530 N 0.793
Pm017596 Prunus mume Pm017596 N 0.792
Cla010897 Citrullus lanatus Cla010897 N 0.731
Cla006831 Citrullus lanatus Cla006831 N 0.773
Ca_19557 Cicer arietinum Ca_19557 N 0.702
Ca_18954 Cicer arietinum Ca_18954 N 0.700
DUO1 Vitis vinifera VIT_15s0021g02040 N 0.768
Traes_2DL_912473A86 Triticum aestivum Traes_2DL_912473A86 N 0.767
Traes_2BL_855A1170C Triticum aestivum Traes_2BL_855A1170C N 0.794
MDP0000237596 Malus domestica MDP0000237596 N 0.792
LjT36B17.50.nd Lotus japonicus LjT36B17.50.nd N 0.788
Thhalv10006475m.g Eutrema salsugineum Thhalv10006475m.g N 0.745
SapurV1A.0490s0170 Salix purpurea SapurV1A.0490s0170 N 0.762
SapurV1A.0033s0200 Salix purpurea SapurV1A.0033s0200 N 0.779
Pavir.J35399 Panicum virgatum Pavir.J35399 N 0.808
Pavir.J30013 Panicum virgatum Pavir.J30013 N 0.808
Pavir.Gb01130 Panicum virgatum Pavir.Gb01130 N 0.816
Pavir.Fb01900 Panicum virgatum Pavir.Fb01900 N 0.841
orange1.1g038795m.g Citrus sinensis orange1.1g038795m.g N 0.768
MDP0000319634 Malus domestica MDP0000319634 N 0.792
Traes_2AL_0A21FB42C Triticum aestivum Traes_2AL_0A21FB42C N 0.794
Lus10009780.g Linum usitatissimum Lus10009780.g N 0.757
Gorai.004G165400 Gossypium raimondii Gorai.004G165400 N 0.857
Gorai.003G112700 Gossypium raimondii Gorai.003G112700 N 0.689
gene12261-v1.0-hybrid Fragaria vesca gene12261-v1.0-hybrid N 0.747
gene04800-v1.0-hybrid Fragaria vesca gene04800-v1.0-hybrid N 0.764
evm.TU.supercontig_37.96 Carica papaya evm.TU.supercontig_37.96 N 0.809
Eucgr.E01581 Eucalyptus grandis Eucgr.E01581 N 0.781
Ciclev10021345m.g Citrus clementina Ciclev10021345m.g N 0.768
Carubv10019483m.g Capsella rubella Carubv10019483m.g N 0.779
GLYMA09G00371 Glycine max GLYMA09G00371 N 0.792
OB08G27600 Oryza brachyantha OB08G27600 N 0.733
OB04G27810 Oryza brachyantha OB04G27810 N 0.801
MTR_8g006470 Medicago truncatula MTR_8g006470 N 0.747
MTR_4g029540 Medicago truncatula MTR_4g029540 N 0.751
LPERR04G16870 Leersia perrieri LPERR04G16870 N 0.743
GSMUA_Achr1G01660_001 Musa acuminata GSMUA_Achr1G01660_001 N 0.687
GRMZM2G311059 Zea mays GRMZM2G311059 N 0.762
GRMZM2G105137 Zea mays GRMZM2G105137 N 0.800
GRMZM2G046443 Zea mays GRMZM2G046443 N 0.872
GLYMA12G37026 Glycine max GLYMA12G37026 N 0.783
OBART04G20790 Oryza barthii OBART04G20790 N 0.801
GLYMA07G14480 Glycine max GLYMA07G14480 N 0.756
GLYMA03G26830 Glycine max GLYMA03G26830 N 0.765
DUO1 Arabidopsis lyrata fgenesh2_kg.5__2511__AT3G60460.1 N 0.755
BRADI5G17600 Brachypodium distachyon BRADI5G17600 N 0.776
Bra007536 Brassica rapa Bra007536 N 0.766
Bra003413 Brassica rapa Bra003413 N 0.755
Bo8g095200 Brassica oleracea Bo8g095200 N 0.766
Bo6g077030 Brassica oleracea Bo6g077030 N 0.746
BGIOSGA016880 Oryza indica BGIOSGA016880 N 0.801
DUO1 Arabidopsis thaliana AT3G60460 N 0.755
POPTR_0014s05420 Populus trichocarpa POPTR_0014s05420 N 0.755
TCM_014872 Theobroma cacao TCM_014872 N 0.777
TCM_005653 Theobroma cacao TCM_005653 N 0.809
Solyc10g019260.1 Solanum lycopersicum Solyc10g019260.1 N 0.716
Solyc01g090530.1 Solanum lycopersicum Solyc01g090530.1 N 0.754
Si015815m.g Setaria italica Si015815m.g N 0.903
Si012032m.g Setaria italica Si012032m.g N 0.816
Sb07g027160 Sorghum bicolor Sb07g027160 N 0.889
Sb06g024510 Sorghum bicolor Sb06g024510 N 0.773
PRUPE_ppa020326mg Prunus persica PRUPE_ppa020326mg N 0.768
PRUPE_ppa016603mg Prunus persica PRUPE_ppa016603mg N 0.793
AMTR_s00111p00072510 Amborella trichopoda AMTR_s00111p00072510 N 0.694
POPTR_0014s05370 Populus trichocarpa POPTR_0014s05370 N 0.755
POPTR_0002s14180 Populus trichocarpa POPTR_0002s14180 N 0.779
PGSC0003DMG400025720 Solanum tuberosum PGSC0003DMG400025720 N 0.751
ORUFI04G22380 Oryza rufipogon ORUFI04G22380 N 0.801
ORGLA04G0178400 Oryza glaberrima ORGLA04G0178400 N 0.801
OPUNC04G18480 Oryza punctata OPUNC04G18480 N 0.801
ONIVA04G19030 Oryza nivara ONIVA04G19030 N 0.801
OMERI04G17240 Oryza meridionalis OMERI04G17240 N 0.801
OGLUM04G20730 Oryza glumaepatula OGLUM04G20730 N 0.801