L893_g28857 (Steinernema glaseri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 L893_g28857 T309366_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.953 0.657
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.894 0.643
nhr-154
M00698_2.00 		Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN		 PBM
Narasimhan et al.(2015)
pTH10650 		0.892 0.629
CBG23380
M01296_2.00 		Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN		 PBM
Lambert et al.(2019)
pTH11449 		0.890 0.643
CBG26996_CONSTRUCT
M01300_2.00 		PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN		 PBM
Lambert et al.(2019)
pTH11460 		0.839 0.557
nhr-204
M00704_2.00 		Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN		 PBM
Narasimhan et al.(2015)
pTH10028 		0.825 0.500
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g28857.t1 Nuclear receptor 99 170

Links

Other Nuclear receptor family TFs
Other Steinernema glaseri TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I
BGIOSGA014498 Oryza indica BGIOSGA014498 I
Bo4g197410 Brassica oleracea Bo4g197410 I
Bra040478 Brassica rapa Bra040478 I
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I
GLYMA03G42301 Glycine max GLYMA03G42301 I
GLYMA07G05381 Glycine max GLYMA07G05381 I
GLYMA16G01951 Glycine max GLYMA16G01951 I
GLYMA19G45090 Glycine max GLYMA19G45090 I
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I
LPERR02G22870 Leersia perrieri LPERR02G22870 I
MLOC_66387 Hordeum vulgare MLOC_66387 I
MTR_7g117455 Medicago truncatula MTR_7g117455 I
MTR_8g023990 Medicago truncatula MTR_8g023990 I
OB02G35380 Oryza brachyantha OB02G35380 I
OBART04G22880 Oryza barthii OBART04G22880 I
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I
ONIVA04G22030 Oryza nivara ONIVA04G22030 I
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I
OS04G0581400 Oryza sativa OS04G0581400 I
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I
TCM_005014 Theobroma cacao TCM_005014 I
TCM_015590 Theobroma cacao TCM_015590 I
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I
TRIUR3_24950 Triticum urartu TRIUR3_24950 I
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I
Ca_01368 Cicer arietinum Ca_01368 I
Cla006845 Citrullus lanatus Cla006845 I
Pm024248 Prunus mume Pm024248 I
30068.m002615 Ricinus communis 30068.m002615 I
30076.m004471 Ricinus communis 30076.m004471 I
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I
cassava39049.m1 Manihot esculenta cassava39049.m1 I
Cucsa.193290 Cucumis sativus Cucsa.193290 I
mgf023686m Mimulus guttatus mgf023686m I
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I
Carubv10017696m.g Capsella rubella Carubv10017696m.g I
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I
PK11025.1 Cannabis sativa PK11025.1 I
PK21157.1 Cannabis sativa PK21157.1 I
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I
NGA3 Arabidopsis thaliana AT1G01030 N
NGA1 Arabidopsis thaliana AT2G46870 N
NGA2 Arabidopsis thaliana AT3G61970 N
BGIOSGA005835 Oryza indica BGIOSGA005835 N
BGIOSGA011738 Oryza indica BGIOSGA011738 N
BGIOSGA031489 Oryza indica BGIOSGA031489 N
Bo3g001110 Brassica oleracea Bo3g001110 N
Bo3g039420 Brassica oleracea Bo3g039420 N
Bo4g006900 Brassica oleracea Bo4g006900 N
Bo4g099000 Brassica oleracea Bo4g099000 N
Bo5g002790 Brassica oleracea Bo5g002790 N
Bo6g079210 Brassica oleracea Bo6g079210 N
Bo8g097490 Brassica oleracea Bo8g097490 N
Bra000434 Brassica rapa Bra000434 N
Bra003482 Brassica rapa Bra003482 N
Bra004501 Brassica rapa Bra004501 N
Bra007646 Brassica rapa Bra007646 N
Bra014415 Brassica rapa Bra014415 N
Bra033294 Brassica rapa Bra033294 N
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N
GRMZM2G018485 Zea mays GRMZM2G018485 N
GRMZM2G024948 Zea mays GRMZM2G024948 N
GRMZM2G082227 Zea mays GRMZM2G082227 N
GRMZM2G098443 Zea mays GRMZM2G098443 N
GRMZM2G102059 Zea mays GRMZM2G102059 N
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N
LPERR03G01560 Leersia perrieri LPERR03G01560 N
LPERR04G18630 Leersia perrieri LPERR04G18630 N
LPERR10G12990 Leersia perrieri LPERR10G12990 N
MLOC_74058 Hordeum vulgare MLOC_74058 N
OB03G11610 Oryza brachyantha OB03G11610 N
OB10G24100 Oryza brachyantha OB10G24100 N
OBART02G28100 Oryza barthii OBART02G28100 N
OBART03G01650 Oryza barthii OBART03G01650 N
OBART10G17010 Oryza barthii OBART10G17010 N
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N
OMERI02G27240 Oryza meridionalis OMERI02G27240 N
OMERI03G01600 Oryza meridionalis OMERI03G01600 N
OMERI10G13480 Oryza meridionalis OMERI10G13480 N
ONIVA02G30750 Oryza nivara ONIVA02G30750 N
ONIVA10G18740 Oryza nivara ONIVA10G18740 N
ONIVA12G15340 Oryza nivara ONIVA12G15340 N
OPUNC02G25780 Oryza punctata OPUNC02G25780 N
OPUNC03G01540 Oryza punctata OPUNC03G01540 N
OPUNC10G16940 Oryza punctata OPUNC10G16940 N
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N
OS02G0683500 Oryza sativa OS02G0683500 N
OS03G0120900 Oryza sativa OS03G0120900 N
OS10G0537100 Oryza sativa OS10G0537100 N
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N
Sb01g030520 Sorghum bicolor Sb01g030520 N
Sb01g049150 Sorghum bicolor Sb01g049150 N
Sb04g031710 Sorghum bicolor Sb04g031710 N
Sb06g026370 Sorghum bicolor Sb06g026370 N
Si011823m.g Setaria italica Si011823m.g N
Si036864m.g Setaria italica Si036864m.g N
Si039972m.g Setaria italica Si039972m.g N
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N
TRIUR3_29732 Triticum urartu TRIUR3_29732 N
Cla005055 Citrullus lanatus Cla005055 N
Cla014858 Citrullus lanatus Cla014858 N
Pm028725 Prunus mume Pm028725 N
Cucsa.106780 Cucumis sativus Cucsa.106780 N
Cucsa.349830 Cucumis sativus Cucsa.349830 N
mgf023769m Mimulus guttatus mgf023769m N
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N
Carubv10009540m.g Capsella rubella Carubv10009540m.g N
Carubv10023656m.g Capsella rubella Carubv10023656m.g N
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N
MDP0000138163 Malus domestica MDP0000138163 N
MDP0000288808 Malus domestica MDP0000288808 N
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N
Pavir.J06582 Panicum virgatum Pavir.J06582 N
Pavir.J27608 Panicum virgatum Pavir.J27608 N
Pavir.J35382 Panicum virgatum Pavir.J35382 N
Pavir.J38226 Panicum virgatum Pavir.J38226 N
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N