Ca_04834 (Cicer arietinum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Ca_04834 T320907_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.939 0.939
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_04834 RWP-RK 588 636

Links

Other RWP-RK family TFs
Other Cicer arietinum TFs

390 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
mgf026186m Mimulus guttatus mgf026186m I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
Bo2g104810 Brassica oleracea Bo2g104810 I 0.000
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.000
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.000
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.000
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.000