AMTR_s00093p00057150 (Amborella trichopoda)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AMTR_s00093p00057150 T326433_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERM98786 Sox 146 211
ERM98786 Sox 262 328
ERM98786 Sox 389 456

Links

Other Sox family TFs
Other Amborella trichopoda TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.423
PK10992.1 Cannabis sativa PK10992.1 I 0.433
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.456
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.485
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.451
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.449
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.419
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.458
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.476
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.426
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.476
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.475
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.449
mgf015439m Mimulus guttatus mgf015439m I 0.470
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.437
30190.m010807 Ricinus communis 30190.m010807 I 0.497
Pm024077 Prunus mume Pm024077 I 0.437
Cla011101 Citrullus lanatus Cla011101 I 0.543
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.509
TCM_016416 Theobroma cacao TCM_016416 I 0.497
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.473
Si017040m.g Setaria italica Si017040m.g I 0.446
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.461
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.437
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.501
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.435
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.471
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.445
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.460
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.457
OB02G19930 Oryza brachyantha OB02G19930 N 0.418
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.416