F775_28710 (Aegilops tauschii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 F775_28710 T329497_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.731 0.886
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.706 0.909
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.706 0.909
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.654 0.682
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.654 0.682
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.602 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMT27813 Sox 131 174

Links

Other Sox family TFs
Other Aegilops tauschii TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF034 Arabidopsis thaliana AT2G44940 D 0.000
ERF035 Arabidopsis thaliana AT3G60490 D 0.000
TINY Arabidopsis thaliana AT5G25810 D 0.000
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.000
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.000
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.000
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.000
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.000
DREB3 Arabidopsis thaliana AT5G11590 I 0.000
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.000
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.000
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.000
Bo1g009990 Brassica oleracea Bo1g009990 I 0.000
Bo2g010530 Brassica oleracea Bo2g010530 I 0.000
Bo3g037480 Brassica oleracea Bo3g037480 I 0.000
Bo4g024220 Brassica oleracea Bo4g024220 I 0.000
Bo4g036220 Brassica oleracea Bo4g036220 I 0.000
Bo4g195280 Brassica oleracea Bo4g195280 I 0.000
Bo6g077080 Brassica oleracea Bo6g077080 I 0.000
Bo7g095710 Brassica oleracea Bo7g095710 I 0.000
Bo8g095240 Brassica oleracea Bo8g095240 I 0.000
Bo9g011210 Brassica oleracea Bo9g011210 I 0.000
Bo9g170060 Brassica oleracea Bo9g170060 I 0.000
Bra000366 Brassica rapa Bra000366 I 0.000
Bra003415 Brassica rapa Bra003415 I 0.000
Bra004878 Brassica rapa Bra004878 I 0.000
Bra005314 Brassica rapa Bra005314 I 0.000
Bra007539 Brassica rapa Bra007539 I 0.000
Bra008952 Brassica rapa Bra008952 I 0.000
Bra009862 Brassica rapa Bra009862 I 0.000
Bra011383 Brassica rapa Bra011383 I 0.000
Bra023332 Brassica rapa Bra023332 I 0.000
Bra036552 Brassica rapa Bra036552 I 0.000
Bra037041 Brassica rapa Bra037041 I 0.000
Bra040333 Brassica rapa Bra040333 I 0.000
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.000
BRADI3G50630 Brachypodium distachyon BRADI3G50630 I 0.000
F775_04501 Aegilops tauschii F775_04501 I 0.000
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.000
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.000
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.000
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.000
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.000
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.000
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.000
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.000
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.000
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.000
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.000
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.000
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.000
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.000
GRMZM2G172936 Zea mays GRMZM2G172936 I 0.000
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.000
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.000
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.000
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.000
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.000
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.000
LPERR04G16900 Leersia perrieri LPERR04G16900 I 0.000
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.000
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.000
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.000
MTR_2g101340 Medicago truncatula MTR_2g101340 I 0.000
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.000
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.000
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.000
OB04G27840 Oryza brachyantha OB04G27840 I 0.000
OBART04G20820 Oryza barthii OBART04G20820 I 0.000
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.000
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.000
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.000
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.000
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.000
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.000
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.000
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.000
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.000
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.000
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.000
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.000
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.000
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.000
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.000
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.000
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.000
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.000
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.000
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.000
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.000
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.000
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.000
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.000
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.000
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.000
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.000
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.000
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.000
OS02G0656600 Oryza sativa OS02G0656600 I 0.000
OS02G0657000 Oryza sativa OS02G0657000 I 0.000
OS04G0549700 Oryza sativa OS04G0549700 I 0.000
OS04G0549800 Oryza sativa OS04G0549800 I 0.000
OS04G0550200 Oryza sativa OS04G0550200 I 0.000
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.000
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.000
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.000
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.000
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.000
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.000
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.000
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.000
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.000
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.000
Si010703m.g Setaria italica Si010703m.g I 0.000
Si012254m.g Setaria italica Si012254m.g I 0.000
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.000
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.000
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.000
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.000
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.000
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.000
TCM_005639 Theobroma cacao TCM_005639 I 0.000
TCM_014892 Theobroma cacao TCM_014892 I 0.000
TCM_015930 Theobroma cacao TCM_015930 I 0.000
TCM_028851 Theobroma cacao TCM_028851 I 0.000
TCM_037194 Theobroma cacao TCM_037194 I 0.000
Traes_2AL_0F08552FB Triticum aestivum Traes_2AL_0F08552FB I 0.000
Traes_2AL_43491B9E0 Triticum aestivum Traes_2AL_43491B9E0 I 0.000
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.000
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.000
Traes_2BL_984787AC0 Triticum aestivum Traes_2BL_984787AC0 I 0.000
Traes_2BL_FC0F8A3DC Triticum aestivum Traes_2BL_FC0F8A3DC I 0.000
Traes_2DL_A336122501 Triticum aestivum Traes_2DL_A336122501 I 0.000
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.000
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.000
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.000
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.000
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.000
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.000
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.000
Ca_01908 Cicer arietinum Ca_01908 I 0.000
Ca_12765 Cicer arietinum Ca_12765 I 0.000
Ca_14911 Cicer arietinum Ca_14911 I 0.000
Ca_18948 Cicer arietinum Ca_18948 I 0.000
Ca_28185 Cicer arietinum Ca_28185 I 0.000
Cla012859 Citrullus lanatus Cla012859 I 0.000
Cla015715 Citrullus lanatus Cla015715 I 0.000
Cla021417 Citrullus lanatus Cla021417 I 0.000
Cla022553 Citrullus lanatus Cla022553 I 0.000
Pm005151 Prunus mume Pm005151 I 0.000
Pm013463 Prunus mume Pm013463 I 0.000
Pm017610 Prunus mume Pm017610 I 0.000
28353.m000054 Ricinus communis 28353.m000054 I 0.000
29794.m003381 Ricinus communis 29794.m003381 I 0.000
30174.m008790 Ricinus communis 30174.m008790 I 0.000
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.000
cassava17387.m1 Manihot esculenta cassava17387.m1 I 0.000
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.000
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.000
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.000
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.000
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.000
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.000
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.000
mgf024703m Mimulus guttatus mgf024703m I 0.000
mgf024816m Mimulus guttatus mgf024816m I 0.000
mgf026339m Mimulus guttatus mgf026339m I 0.000
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.000
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.000
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.000
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.000
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.000
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.000
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.000
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.000
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.000
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.000
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.000
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.000
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.000
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.000
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.000
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.000
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.000
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.000
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.000
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.000
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.000
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.000
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.000
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.000
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.000
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.000
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.000
gene04810-v1.0-hybrid Fragaria vesca gene04810-v1.0-hybrid I 0.000
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.000
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.000
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.000
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.000
Gorai.001G176500 Gossypium raimondii Gorai.001G176500 I 0.000
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.000
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.000
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.000
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.000
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.000
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.000
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.000
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.000
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.000
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.000
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.000
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.000
MDP0000174352 Malus domestica MDP0000174352 I 0.000
MDP0000241650 Malus domestica MDP0000241650 I 0.000
MDP0000242611 Malus domestica MDP0000242611 I 0.000
MDP0000790788 Malus domestica MDP0000790788 I 0.000
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.000
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.000
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.000
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.000
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.000
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.000
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.000
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.000
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.000
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.000
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.000
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.000
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.000
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.000
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.000
PK01156.1 Cannabis sativa PK01156.1 I 0.000
PK28082.1 Cannabis sativa PK28082.1 I 0.000
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.000
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.000
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.000
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.000