SELMODRAFT_18312 (Selaginella moellendorffii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 SELMODRAFT_18312 T332499_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.490 0.580
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ19217 Sox 13 82

Links

Other Sox family TFs
Other Selaginella moellendorffii TFs

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMG-1 Pisum sativum Q41026_PEA D 0.490
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.572
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.555
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.445
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.465
HMGB2 Arabidopsis thaliana AT1G20693 I 0.495
HMGB3 Arabidopsis thaliana AT1G20696 I 0.547
HMGB4 Arabidopsis thaliana AT2G17560 I 0.463
SSRP1 Arabidopsis thaliana AT3G28730 I 0.423
HMGB1 Arabidopsis thaliana AT3G51880 I 0.495
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.451
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.439
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.439
Bo1g006360 Brassica oleracea Bo1g006360 I 0.462
Bo5g030580 Brassica oleracea Bo5g030580 I 0.585
Bo7g014280 Brassica oleracea Bo7g014280 I 0.507
Bo7g061420 Brassica oleracea Bo7g061420 I 0.553
Bo7g101270 Brassica oleracea Bo7g101270 I 0.500
Bo7g117500 Brassica oleracea Bo7g117500 I 0.462
Bo8g070350 Brassica oleracea Bo8g070350 I 0.553
Bo8g081200 Brassica oleracea Bo8g081200 I 0.488
Bra002073 Brassica rapa Bra002073 I 0.507
Bra011624 Brassica rapa Bra011624 I 0.462
Bra017723 Brassica rapa Bra017723 I 0.462
Bra025838 Brassica rapa Bra025838 I 0.558
Bra037266 Brassica rapa Bra037266 I 0.481
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.516
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.440
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.537
F775_27510 Aegilops tauschii F775_27510 I 0.516
F775_30706 Aegilops tauschii F775_30706 I 0.434
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.495
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.495
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.547
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.472
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.492
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.492
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.501
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.501
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.515
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.505
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.515
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.535
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.509
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.559
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.516
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.546
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.519
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.519
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.450
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.417
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.460
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.519
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.519
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.509
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.509
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.434
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.450
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.516
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.528
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.499
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.504
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.495
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.530
OB06G35870 Oryza brachyantha OB06G35870 I 0.516
OB09G25530 Oryza brachyantha OB09G25530 I 0.509
OBART06G28090 Oryza barthii OBART06G28090 I 0.509
OBART08G00070 Oryza barthii OBART08G00070 I 0.439
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.509
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.439
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.509
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.439
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.509
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.502
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.509
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.439
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.502
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.509
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.439
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.509
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.502
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.509
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.439
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.502
OS06G0728000 Oryza sativa OS06G0728000 I 0.509
OS08G0101100 Oryza sativa OS08G0101100 I 0.439
OS09G0551600 Oryza sativa OS09G0551600 I 0.502
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.421
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.547
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.501
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.421
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.541
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.425
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.547
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.575
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.547
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.565
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.572
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.511
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.547
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.544
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.547
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.519
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.516
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.423
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.512
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.628
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.741
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.628
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.512
Si007288m.g Setaria italica Si007288m.g I 0.509
Si031512m.g Setaria italica Si031512m.g I 0.519
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.550
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.421
TCM_000068 Theobroma cacao TCM_000068 I 0.533
TCM_021706 Theobroma cacao TCM_021706 I 0.529
TCM_034406 Theobroma cacao TCM_034406 I 0.552
TCM_042534 Theobroma cacao TCM_042534 I 0.612
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.431
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.528
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.528
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.434
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.434
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.434
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.450
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.450
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.450
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.516
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.509
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.434
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.450
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.540
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.501
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.440
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.599
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.537
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.431
Ca_04825 Cicer arietinum Ca_04825 I 0.428
Ca_05351 Cicer arietinum Ca_05351 I 0.515
Ca_09896 Cicer arietinum Ca_09896 I 0.530
Ca_10725 Cicer arietinum Ca_10725 I 0.482
Ca_19340 Cicer arietinum Ca_19340 I 0.485
Cla009093 Citrullus lanatus Cla009093 I 0.550
Cla018386 Citrullus lanatus Cla018386 I 0.492
Cla023817 Citrullus lanatus Cla023817 I 0.469
Pm002934 Prunus mume Pm002934 I 0.511
Pm018913 Prunus mume Pm018913 I 0.544
Pm026798 Prunus mume Pm026798 I 0.538
29600.m000548 Ricinus communis 29600.m000548 I 0.488
29669.m000844 Ricinus communis 29669.m000844 I 0.572
29701.m000600 Ricinus communis 29701.m000600 I 0.477
30170.m014386 Ricinus communis 30170.m014386 I 0.538
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.538
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.538
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.538
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.469
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.571
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.538
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.464
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.464
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.464
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.464
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.512
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.469
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.550
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.505
fgenesh1_pg.scaffold_277000017 Physcomitrella patens fgenesh1_pg.scaffold_277000017 I 0.420
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.495
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.495
mgf000913m Mimulus guttatus mgf000913m I 0.453
mgf006113m Mimulus guttatus mgf006113m I 0.535
mgf008076m Mimulus guttatus mgf008076m I 0.535
mgf009330m Mimulus guttatus mgf009330m I 0.531
mgf014518m Mimulus guttatus mgf014518m I 0.540
mgf016363m Mimulus guttatus mgf016363m I 0.495
mgf016608m Mimulus guttatus mgf016608m I 0.535
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.534
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.446
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.528
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.415
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.544
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.423
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.472
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.495
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.547
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.495
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.423
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.495
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.472
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.547
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.495
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.495
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.547
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.472
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.423
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.483
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.552
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.460
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.564
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.565
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.501
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.547
Eucgr.H01676 Eucalyptus grandis Eucgr.H01676 I 0.421
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.518
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.495
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.602
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.579
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.486
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.547
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.430
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.469
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.482
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.464
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.552
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.494
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.547
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.494
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.450
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.547
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.554
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.530
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.530
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.575
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.509
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.575
MDP0000275042 Malus domestica MDP0000275042 I 0.542
MDP0000362980 Malus domestica MDP0000362980 I 0.544
MDP0000607529 Malus domestica MDP0000607529 I 0.541
MDP0000757111 Malus domestica MDP0000757111 I 0.544
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.565
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.460
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.552
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.551
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.435
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.519
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.519
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.509
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.509
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.547
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.539
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.575
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.547
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.565
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.539
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.423
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.547
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.564
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.501
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.481
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.456
PK11149.1 Cannabis sativa PK11149.1 I 0.526
PK14705.1 Cannabis sativa PK14705.1 I 0.440
PK27241.1 Cannabis sativa PK27241.1 I 0.436
PK29786.1 Cannabis sativa PK29786.1 I 0.462
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.496
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.562
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.485
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.544
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.417
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.433
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.431
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.431
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.466
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.466
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.454
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.454
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.454
MLOC_57354 Hordeum vulgare MLOC_57354 N 0.417
OB02G34710 Oryza brachyantha OB02G34710 N 0.466
OB08G10120 Oryza brachyantha OB08G10120 N 0.420
OBART02G27340 Oryza barthii OBART02G27340 N 0.466
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.466
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.466
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.466
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.466
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.466
OS02G0670400 Oryza sativa OS02G0670400 N 0.466
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.454
Si018635m.g Setaria italica Si018635m.g N 0.454
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.469
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.469
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.454
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.454