GPLIN_000970900 (Globodera pallida)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 GPLIN_000970900 T336348_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000970900 Sox 1 44

Links

Other Sox family TFs
Other Globodera pallida TFs

244 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sox17 Mus musculus ENSMUSG00000025902 D 0.500
ENSAMXG00000017231 Astyanax mexicanus ENSAMXG00000017231 I 0.484
ENSAPLG00000013168 Anas platyrhynchos ENSAPLG00000013168 I 0.445
SOX8 Callithrix jacchus ENSCJAG00000002684 I 0.451
SOX8 Equus caballus ENSECAG00000016320 I 0.586
SOX10 Echinops telfairi ENSETEG00000012633 I 0.445
SOX9 Echinops telfairi ENSETEG00000020237 I 0.445
ENSFCAG00000015685 Felis catus ENSFCAG00000015685 I 0.445
SOX2 Felis catus ENSFCAG00000029205 I 0.617
ENSLOCG00000011834 Lepisosteus oculatus ENSLOCG00000011834 I 0.570
SOX8 Microcebus murinus ENSMICG00000011516 I 0.451
SOX9 Myotis lucifugus ENSMLUG00000030312 I 0.445
ENSOANG00000002448 Ornithorhynchus anatinus ENSOANG00000002448 I 0.592
ENSOANG00000011188 Ornithorhynchus anatinus ENSOANG00000011188 I 0.541
ENSOARG00000000906 Ovis aries ENSOARG00000000906 I 0.589
ENSPANG00000005859 Papio anubis ENSPANG00000005859 I 0.618
SOX2 Procavia capensis ENSPCAG00000003690 I 0.617
ENSPFOG00000015998 Poecilia formosa ENSPFOG00000015998 I 0.429
SOX18 Pan troglodytes ENSPTRG00000030459 I 0.494
SOX17 Sorex araneus ENSSARG00000009573 I 0.494
ENSSHAG00000008406 Sarcophilus harrisii ENSSHAG00000008406 I 0.445
ENSSTOG00000011011 Ictidomys tridecemlineatus ENSSTOG00000011011 I 0.652
ENSTSYG00000001164 Tarsius syrichta ENSTSYG00000001164 I 0.479
ENSTSYG00000006321 Tarsius syrichta ENSTSYG00000006321 I 0.451
ENSTTRG00000015548 Tursiops truncatus ENSTTRG00000015548 I 0.484
GH20178 Drosophila grimshawi FBgn0127642 I 0.420
GD15457 Drosophila simulans FBgn0187124 I 0.427
HMEL002398 Heliconius melpomene HMEL002398 I 0.538
HMEL006651 Heliconius melpomene HMEL006651 I 0.496
KGM_19696 Danaus plexippus KGM_19696 I 0.456
L798_12049 Zootermopsis nevadensis L798_12049 I 0.513
MESCA012239 Megaselia scalaris MESCA012239 I 0.669
Ppa-sox-2 Pristionchus pacificus PPA07024 I 0.422
Smp_155690 Schistosoma mansoni Smp_155690 I 0.415
sox-2 Caenorhabditis elegans WBGene00004949 I 0.703
Alligator_sinensis_CCG005706.1 Alligator sinensis Alligator_sinensis_CCG005706.1 I 0.419
Brh_R008736 Buceros rhinoceros Brh_R008736 I 0.538
ENSBTAP00000027633-D1 Bos grunniens ENSBTAP00000027633-D1 I 0.504
ENSP00000322568 Macaca fascicularis ENSP00000322568 I 0.562
ENSP00000409273 Macaca fascicularis ENSP00000409273 I 0.445
Gfo_R006305 Geospiza fortis Gfo_R006305 I 0.482
Myotis_brandtii_SOX2_10019709 Myotis brandtii Myotis_brandtii_SOX2_10019709 I 0.658
Myotis_brandtii_SOX21_10030218 Myotis brandtii Myotis_brandtii_SOX21_10030218 I 0.422
Ogr00751 Ophisaurus gracilis Ogr00751 I 0.451
sox13.S Xenopus laevis XB-GENE-865496 I 0.488
sox5.S Xenopus laevis XB-GENE-865667 I 0.481
XP_002170844.1 Hydra magnipapillata XP_002170844.1 I 0.513
ACOM029353 Anopheles coluzzii ACOM029353 I 0.596
AMEC000538 Anopheles melas AMEC000538 I 0.630
ANCCEY_05256 Ancylostoma ceylanicum ANCCEY_05256 I 0.429
csin108932 Clonorchis sinensis csin108932 I 0.611
D915_00082 Fasciola hepatica D915_00082 I 0.429
DICVIV_12599 Dictyocaulus viviparus DICVIV_12599 I 0.429
GPLIN_000596700 Globodera pallida GPLIN_000596700 I 0.558
GPLIN_001405800 Globodera pallida GPLIN_001405800 I 0.558
maker-nMf.1.1.scaf00287-augustus-gene-0.13 Meloidogyne floridensis maker-nMf.1.1.scaf00287-augustus-gene-0.13 I 0.482
NBR_0000581201 Nippostrongylus brasiliensis NBR_0000581201 I 0.429
nDi.2.2.2.g09704 Dirofilaria immitis nDi.2.2.2.g09704 I 0.422
SMTD_0000255001 Schistosoma mattheei SMTD_0000255001 I 0.415
SROB_0000452001 Schistosoma rodhaini SROB_0000452001 I 0.415
T265_14506 Opisthorchis viverrini T265_14506 I 0.583
TELCIR_00631 Teladorsagia circumcincta TELCIR_00631 I 0.506
CpipJ_CPIJ012041 Culex pipiens CpipJ_CPIJ012041 N 0.501
CpipJ_CPIJ012498 Culex pipiens CpipJ_CPIJ012498 N 0.460
CpipJ_CPIJ014017 Culex pipiens CpipJ_CPIJ014017 N 0.434
A1O9_05704 Exophiala aquamarina A1O9_05704 N 0.464
AAEL000771 Aedes aegypti AAEL000771 N 0.453
ACEP10857 Atta cephalotes ACEP10857 N 0.529
ACEP25851 Atta cephalotes ACEP25851 N 0.460
AGAP028091 Anopheles gambiae AGAP028091 N 0.460
AOL_s00081g337 Arthrobotrys oligospora AOL_s00081g337 N 0.484
AWRI1499_3370 Brettanomyces bruxellensis AWRI1499_3370 N 0.469
BGIBMGA003081 Bombyx mori BGIBMGA003081 N 0.507
BN7_5034 Wickerhamomyces ciferrii BN7_5034 N 0.425
BOTBODRAFT_575781 Botryobasidium botryosum BOTBODRAFT_575781 N 0.493
CaO19.1731 Candida albicans CaO19.1731 N 0.428
CaO19.9299 Candida albicans CaO19.9299 N 0.428
CC1G_05598 Coprinopsis cinerea CC1G_05598 N 0.438
CC1G_07924 Coprinopsis cinerea CC1G_07924 N 0.434
CFIO01_04514 Colletotrichum fioriniae CFIO01_04514 N 0.515
CNM02020 Cryptococcus neoformans CNM02020 N 0.532
CPIJ012041 Culex quinquefasciatus CPIJ012041 N 0.501
CPIJ012498 Culex quinquefasciatus CPIJ012498 N 0.460
CPIJ014017 Culex quinquefasciatus CPIJ014017 N 0.434
DAPPUDRAFT_113704 Daphnia pulex DAPPUDRAFT_113704 N 0.466
DRE_00029 Drechslerella stenobrocha DRE_00029 N 0.490
ENSAMXG00000003325 Astyanax mexicanus ENSAMXG00000003325 N 0.456
ENSAPLG00000003216 Anas platyrhynchos ENSAPLG00000003216 N 0.451
ENSAPLG00000010204 Anas platyrhynchos ENSAPLG00000010204 N 0.507
SOX18 Callithrix jacchus ENSCJAG00000022379 N 0.510
ENSCSAG00000016751 Chlorocebus sabaeus ENSCSAG00000016751 N 0.500
SOX18 Dasypus novemcinctus ENSDNOG00000036237 N 0.507
SOX12 Dasypus novemcinctus ENSDNOG00000044763 N 0.560
SOX8 Echinops telfairi ENSETEG00000015470 N 0.451
SOX8 Felis catus ENSFCAG00000004219 N 0.451
ENSMGAG00000006624 Meleagris gallopavo ENSMGAG00000006624 N 0.507
SOX18 Procavia capensis ENSPCAG00000015663 N 0.500
SOX9 Tupaia belangeri ENSTBEG00000000175 N 0.445
sox9a Tetraodon nigroviridis ENSTNIG00000001901 N 0.539
GL15054 Drosophila persimilis FBgn0152658 N 0.426
GD17533 Drosophila simulans FBgn0189083 N 0.420
GB40963 Apis mellifera GB40963 N 0.428
GLOINDRAFT_25375 Rhizophagus irregularis GLOINDRAFT_25375 N 0.528
GLOINDRAFT_31865 Rhizophagus irregularis GLOINDRAFT_31865 N 0.426
GLOINDRAFT_323774 Rhizophagus irregularis GLOINDRAFT_323774 N 0.522
GLOINDRAFT_346686 Rhizophagus irregularis GLOINDRAFT_346686 N 0.526
GLOINDRAFT_83691 Rhizophagus irregularis GLOINDRAFT_83691 N 0.564
GLOTRDRAFT_8101 Gloeophyllum trabeum GLOTRDRAFT_8101 N 0.483
GYMLUDRAFT_143012 Gymnopus luxurians GYMLUDRAFT_143012 N 0.500
H072_9933 Dactylellina haptotyla H072_9933 N 0.499
HMEL013676 Heliconius melpomene HMEL013676 N 0.432
HYDPIDRAFT_51400 Hydnomerulius pinastri HYDPIDRAFT_51400 N 0.452
ISCW001638 Ixodes scapularis ISCW001638 N 0.451
K443DRAFT_58201 Laccaria amethystina K443DRAFT_58201 N 0.477
L798_00185 Zootermopsis nevadensis L798_00185 N 0.440
L798_05432 Zootermopsis nevadensis L798_05432 N 0.436
L798_12046 Zootermopsis nevadensis L798_12046 N 0.507
LACBIDRAFT_169971 Laccaria bicolor LACBIDRAFT_169971 N 0.477
LotgiG143673 Lottia gigantea LotgiG143673 N 0.435
M404DRAFT_787968 Pisolithus tinctorius M404DRAFT_787968 N 0.427
MCINX010139 Melitaea cinxia MCINX010139 N 0.427
MESCA006188 Megaselia scalaris MESCA006188 N 0.444
MESCA006364 Megaselia scalaris MESCA006364 N 0.572
MPER_06248 Moniliophthora perniciosa MPER_06248 N 0.436
MTR_6g048860 Medicago truncatula MTR_6g048860 N 0.439
NechaG79025 Fusarium solani NechaG79025 N 0.423
PDIP_33190 Penicillium digitatum PDIP_33190 N 0.517
PEX1_064750 Penicillium expansum PEX1_064750 N 0.517
PFICI_02946 Pestalotiopsis fici PFICI_02946 N 0.509
PHUM433280 Pediculus humanus PHUM433280 N 0.462
PLEOSDRAFT_1017219 Pleurotus ostreatus PLEOSDRAFT_1017219 N 0.467
PLICRDRAFT_78649 Plicaturopsis crispa PLICRDRAFT_78649 N 0.453
POSPLDRAFT_103238 Postia placenta POSPLDRAFT_103238 N 0.457
POSPLDRAFT_104634 Postia placenta POSPLDRAFT_104634 N 0.472
PSEUBRA_SCAF2g02551 Pseudozyma brasiliensis PSEUBRA_SCAF2g02551 N 0.512
PTTG_00444 Puccinia triticina PTTG_00444 N 0.472
RPRC001038 Rhodnius prolixus RPRC001038 N 0.570
RPRC013413 Rhodnius prolixus RPRC013413 N 0.485
SCLCIDRAFT_59496 Scleroderma citrinum SCLCIDRAFT_59496 N 0.483
SERLA73DRAFT_139986 Serpula lacrymans SERLA73DRAFT_139986 N 0.466
SINV16572 Solenopsis invicta SINV16572 N 0.460
SINV19749 Solenopsis invicta SINV19749 N 0.488
SINV24165 Solenopsis invicta SINV24165 N 0.458
SMAR007058 Strigamia maritima SMAR007058 N 0.445
SMAR010125 Strigamia maritima SMAR010125 N 0.453
TC009856 Tribolium castaneum TC009856 N 0.453
Thaps7519 Thalassiosira pseudonana Thaps7519 N 0.439
UCREL1_237 Eutypa lata UCREL1_237 N 0.517
UCREL1_469 Eutypa lata UCREL1_469 N 0.539
UCREL1_749 Eutypa lata UCREL1_749 N 0.590
WALSEDRAFT_27096 Wallemia sebi WALSEDRAFT_27096 N 0.446
WALSEDRAFT_59420 Wallemia sebi WALSEDRAFT_59420 N 0.538
YQE_03817 Dendroctonus ponderosae YQE_03817 N 0.451
YQE_08562 Dendroctonus ponderosae YQE_08562 N 0.589
YQE_13041 Dendroctonus ponderosae YQE_13041 N 0.460
Afo_R012388 Aptenodytes forsteri Afo_R012388 N 0.451
Afo_R012670 Aptenodytes forsteri Afo_R012670 N 0.573
Brh_R004116 Buceros rhinoceros Brh_R004116 N 0.643
Ca_14341 Cicer arietinum Ca_14341 N 0.418
Cmyd_10006594 Chelonia mydas Cmyd_10006594 N 0.451
Hsal_04827--XP_001122993.1_APIME Harpegnathos saltator Hsal_04827--XP_001122993.1_APIME N 0.451
Hsal_05005--XP_001122373.1_APIME Harpegnathos saltator Hsal_05005--XP_001122373.1_APIME N 0.463
Ogr08337 Ophisaurus gracilis Ogr08337 N 0.703
Ogr11176 Ophisaurus gracilis Ogr11176 N 0.491
e_gw.60.194.1 Branchiostoma floridae e_gw.60.194.1 N 0.511
fgenesh1_pg.C_scaffold_11000031 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000031 N 0.547
fgenesh1_pg.sca_3_chr4_2_0000426 Nectria haematococca fgenesh1_pg.sca_3_chr4_2_0000426 N 0.423
gw.110.115.1 Branchiostoma floridae gw.110.115.1 N 0.488
CAA46605 Xenopus laevis CAA46605 N 0.495
CAA46607 Xenopus laevis CAA46607 N 0.471
CLEC006960 Cimex lectularius CLEC006960 N 0.507
EFA85451.1 Polysphondylium pallidum EFA85451.1 N 0.449
HHAL000218-PA Halyomorpha halys HHAL000218-PA N 0.445
HHAL001293-PA Halyomorpha halys HHAL001293-PA N 0.460
HHAL001583-PA Halyomorpha halys HHAL001583-PA N 0.494
LCUP001586 Lucilia cuprina LCUP001586 N 0.529
LDEC017494 Leptinotarsa decemlineata LDEC017494 N 0.501
LDEC018263 Leptinotarsa decemlineata LDEC018263 N 0.451
LDEC019307 Leptinotarsa decemlineata LDEC019307 N 0.675
PredSwiss_ASS2010_3779.1 Pneumocystis carinii PredSwiss_ASS2010_3779.1 N 0.436
PredSwiss_CON1835.1 Pneumocystis carinii PredSwiss_CON1835.1 N 0.436
Sjc_0107520 Schistosoma japonicum Sjc_0107520 N 0.663
SMU15030186 Schmidtea mediterranea SMU15030186 N 0.697
XP_002935940 Xenopus tropicalis XP_002935940 N 0.529
AALB009772 Anopheles albimanus AALB009772 N 0.453
AALB009867 Anopheles albimanus AALB009867 N 0.501
AARA000825 Anopheles arabiensis AARA000825 N 0.460
AATE015714 Anopheles atroparvus AATE015714 N 0.460
AATE016483 Anopheles atroparvus AATE016483 N 0.441
ACHR008996 Anopheles christyi ACHR008996 N 0.434
ACOM022799 Anopheles coluzzii ACOM022799 N 0.501
ACOM026653 Anopheles coluzzii ACOM026653 N 0.453
ACUA008827 Anopheles culicifacies ACUA008827 N 0.434
ACUA010594 Anopheles culicifacies ACUA010594 N 0.507
ACUA012732 Anopheles culicifacies ACUA012732 N 0.453
ADIR005631 Anopheles dirus ADIR005631 N 0.507
ADIR009661 Anopheles dirus ADIR009661 N 0.453
AEPI003629 Anopheles epiroticus AEPI003629 N 0.507
AEPI007652 Anopheles epiroticus AEPI007652 N 0.437
AEPI007948 Anopheles epiroticus AEPI007948 N 0.453
AFUN006689 Anopheles funestus AFUN006689 N 0.434
AFUN009317 Anopheles funestus AFUN009317 N 0.453
AFUN010198 Anopheles funestus AFUN010198 N 0.507
AMAM004028 Anopheles maculatus AMAM004028 N 0.434
AMAM023617 Anopheles maculatus AMAM023617 N 0.453
AMEC007393 Anopheles melas AMEC007393 N 0.434
AMEC011653 Anopheles melas AMEC011653 N 0.453
AMEM002834 Anopheles merus AMEM002834 N 0.453
AMEM007694 Anopheles merus AMEM007694 N 0.583
AMIN001220 Anopheles minimus AMIN001220 N 0.434
AMIN009302 Anopheles minimus AMIN009302 N 0.507
AQUA001261 Anopheles quadriannulatus AQUA001261 N 0.501
AQUA005880 Anopheles quadriannulatus AQUA005880 N 0.453
ASIS001889 Anopheles sinensis ASIS001889 N 0.453
ASTEI06131 Anopheles stephensi ASTEI06131 N 0.453
ASTEI06408 Anopheles stephensi ASTEI06408 N 0.507
BGLB010902 Biomphalaria glabrata BGLB010902 N 0.520
PPAI003639 Phlebotomus papatasi PPAI003639 N 0.693
PPAI005428 Phlebotomus papatasi PPAI005428 N 0.482
ALUE_0000245701 Ascaris lumbricoides ALUE_0000245701 N 0.534
ALUE_0000639901 Ascaris lumbricoides ALUE_0000639901 N 0.488
D915_01276 Fasciola hepatica D915_01276 N 0.424
D915_11240 Fasciola hepatica D915_11240 N 0.449
D918_08317 Trichuris suis D918_08317 N 0.496
DILT_0001316601 Diphyllobothrium latum DILT_0001316601 N 0.416
DILT_0001785501 Diphyllobothrium latum DILT_0001785501 N 0.442
ECPE_0001194001 Echinostoma caproni ECPE_0001194001 N 0.424
GPUH_0000499601 Gongylonema pulchrum GPUH_0000499601 N 0.495
Hba_21281 Heterorhabditis bacteriophora Hba_21281 N 0.703
L898_g4879 Steinernema monticolum L898_g4879 N 0.479
MCOS_0000919201 Mesocestoides corti MCOS_0000919201 N 0.444
nAv.1.0.1.g07335 Acanthocheilonema viteae nAv.1.0.1.g07335 N 0.434
PEQ_0000549401 Parascaris equorum PEQ_0000549401 N 0.429
PXEA_0000763901 Protopolystoma xenopodis PXEA_0000763901 N 0.551
PXEA_0002992801 Protopolystoma xenopodis PXEA_0002992801 N 0.663
SCUD_0001126301 Schistosoma curassoni SCUD_0001126301 N 0.416
SMRZ_0002061501 Schistosoma margrebowiei SMRZ_0002061501 N 0.416
SMTD_0000090701 Schistosoma mattheei SMTD_0000090701 N 0.433
SMTD_0001685201 Schistosoma mattheei SMTD_0001685201 N 0.416
SPER_0000914201 Spirometra erinaceieuropaei SPER_0000914201 N 0.442
SPER_0001708101 Spirometra erinaceieuropaei SPER_0001708101 N 0.600
SPER_0001952401 Spirometra erinaceieuropaei SPER_0001952401 N 0.600
TRE_0000259001 Trichobilharzia regenti TRE_0000259001 N 0.620
TTAC_0001064401 Hydatigera taeniaeformis TTAC_0001064401 N 0.559