TCP4 (Arabidopsis thaliana)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AT3G15030 T343687_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00		 Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.980 0.974
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.959 0.609
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.959 0.609
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.959 0.609
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.943 0.548
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.897 0.435
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.888 0.452
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.885 0.435
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.877 0.435
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.865 0.391
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.852 0.383
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.851 0.417
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.851 0.417
For this family, TFs with SR scores > 0.822 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02501_2.00 TCP 43 256

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G15030.1 TCP 43 256
AT3G15030.2 TCP 43 256
AT3G15030.3 TCP 43 256
AT3G15030.4 TCP 43 256

Links

Other TCP family TFs
Other Arabidopsis thaliana TFs

420 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.096390 Cucumis sativus Cucsa.096390 N
Gorai.009G016600 Gossypium raimondii Gorai.009G016600 N
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N
Carubv10009517m.g Capsella rubella Carubv10009517m.g N
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N
Cucsa.295070 Cucumis sativus Cucsa.295070 N
Cucsa.132180 Cucumis sativus Cucsa.132180 N
Gorai.010G062800 Gossypium raimondii Gorai.010G062800 N
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N
cassava5958.m1 Manihot esculenta cassava5958.m1 N
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N
29841.m002855 Ricinus communis 29841.m002855 N
Pm027560 Prunus mume Pm027560 N
Cla016961 Citrullus lanatus Cla016961 N
Cla012920 Citrullus lanatus Cla012920 N
MDP0000574053 Malus domestica MDP0000574053 N
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N
PK24888.1 Cannabis sativa PK24888.1 N
PK04144.1 Cannabis sativa PK04144.1 N
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N
Pavir.J29994 Panicum virgatum Pavir.J29994 N
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N
Cla012423 Citrullus lanatus Cla012423 N
MDP0000375866 Malus domestica MDP0000375866 N
MDP0000301302 Malus domestica MDP0000301302 N
MDP0000248422 Malus domestica MDP0000248422 N
MDP0000152128 Malus domestica MDP0000152128 N
Lus10030108.g Linum usitatissimum Lus10030108.g N
Lus10019406.g Linum usitatissimum Lus10019406.g N
Lus10002168.g Linum usitatissimum Lus10002168.g N
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N
GLYMA06G30590 Glycine max GLYMA06G30590 N
OB12G26010 Oryza brachyantha OB12G26010 N
MTR_4g114785 Medicago truncatula MTR_4g114785 N
MTR_4g114770 Medicago truncatula MTR_4g114770 N
MTR_0339s0020 Medicago truncatula MTR_0339s0020 N
MTR_0339s0010 Medicago truncatula MTR_0339s0010 N
LPERR12G16300 Leersia perrieri LPERR12G16300 N
GRMZM2G022365 Zea mays GRMZM2G022365 N
GLYMA15G01040 Glycine max GLYMA15G01040 N
GLYMA13G44230 Glycine max GLYMA13G44230 N
OBART12G19140 Oryza barthii OBART12G19140 N
GLYMA06G30350 Glycine max GLYMA06G30350 N
GLYMA06G25310 Glycine max GLYMA06G25310 N
GLYMA04G23980 Glycine max GLYMA04G23980 N
GLYMA04G23780 Glycine max GLYMA04G23780 N
BRADI4G21540 Brachypodium distachyon BRADI4G21540 N
Bra016665 Brassica rapa Bra016665 N
Bo8g066360 Brassica oleracea Bo8g066360 N
BGIOSGA035814 Oryza indica BGIOSGA035814 N
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N
Ca_19192 Cicer arietinum Ca_19192 N
Ca_06682 Cicer arietinum Ca_06682 N
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N
TCM_038107 Theobroma cacao TCM_038107 N
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N
OS12G0620400 Oryza sativa OS12G0620400 N
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N
OPUNC12G17310 Oryza punctata OPUNC12G17310 N
ONIVA02G25900 Oryza nivara ONIVA02G25900 N
OMERI12G13490 Oryza meridionalis OMERI12G13490 N
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N