Cla021417 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla021417 T006520_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.785 0.840
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.785 0.840
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.701 0.840
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.701 0.840
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.701 0.860
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.701 0.860
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.691 0.780
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.691 0.780
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.691 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla021417 AP2 49 100

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28353.m000054 Ricinus communis 28353.m000054 I 0.700
29794.m003381 Ricinus communis 29794.m003381 I 0.760
30146.m003535 Ricinus communis 30146.m003535 I 0.694
30174.m008790 Ricinus communis 30174.m008790 I 0.704
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.757
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.756
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.699
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.722
Bo2g010530 Brassica oleracea Bo2g010530 I 0.747
Bo3g028500 Brassica oleracea Bo3g028500 I 0.685
Bo3g037480 Brassica oleracea Bo3g037480 I 0.694
Bo3g171090 Brassica oleracea Bo3g171090 I 0.697
Bo4g024220 Brassica oleracea Bo4g024220 I 0.695
Bo4g195280 Brassica oleracea Bo4g195280 I 0.695
Bo6g077080 Brassica oleracea Bo6g077080 I 0.747
Bo7g095710 Brassica oleracea Bo7g095710 I 0.785
Bo7g115860 Brassica oleracea Bo7g115860 I 0.697
Bo8g095240 Brassica oleracea Bo8g095240 I 0.741
Bo9g011210 Brassica oleracea Bo9g011210 I 0.726
Bo9g170060 Brassica oleracea Bo9g170060 I 0.757
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.696
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.757
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.701
Bostr.26326s0067 Boechera stricta Bostr.26326s0067 I 0.677
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.782
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.691
Bra000366 Brassica rapa Bra000366 I 0.694
Bra003415 Brassica rapa Bra003415 I 0.747
Bra004878 Brassica rapa Bra004878 I 0.695
Bra007539 Brassica rapa Bra007539 I 0.741
Bra008952 Brassica rapa Bra008952 I 0.757
Bra009862 Brassica rapa Bra009862 I 0.785
Bra023026 Brassica rapa Bra023026 I 0.685
Bra023332 Brassica rapa Bra023332 I 0.745
Bra034535 Brassica rapa Bra034535 I 0.697
Bra036552 Brassica rapa Bra036552 I 0.726
Bra037041 Brassica rapa Bra037041 I 0.698
Bra040333 Brassica rapa Bra040333 I 0.695
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.720
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.701
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.695
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.691
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.785
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.757
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.691
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.695
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.701
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.760
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.760
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.692
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.692
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.693
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.681
Ca_01908 Cicer arietinum Ca_01908 I 0.734
Ca_12765 Cicer arietinum Ca_12765 I 0.682
Ca_14911 Cicer arietinum Ca_14911 I 0.763
Ca_18948 Cicer arietinum Ca_18948 I 0.717
Ca_28185 Cicer arietinum Ca_28185 I 0.734
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.718
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.734
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.710
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.760
Ciclev10021740m.g Citrus clementina Ciclev10021740m.g I 0.677
Cla015715 Citrullus lanatus Cla015715 I 0.729
Cla022553 Citrullus lanatus Cla022553 I 0.745
Cla023465 Citrullus lanatus Cla023465 I 0.677
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.742
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.838
Cucsa.359390 Cucumis sativus Cucsa.359390 I 0.700
DREB3 Arabidopsis thaliana AT5G11590 I 0.757
ERF034 Arabidopsis thaliana AT2G44940 D 0.701
ERF035 Arabidopsis thaliana AT3G60490 D 0.701
ERF043 Arabidopsis thaliana AT4G32800 D 0.691
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.758
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.750
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.761
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.698
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.699
evm.TU.supercontig_109.32 Carica papaya evm.TU.supercontig_109.32 I 0.679
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.734
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.694
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.701
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.701
gene04810-v1.0-hybrid Fragaria vesca gene04810-v1.0-hybrid I 0.681
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.760
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.692
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.734
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.771
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.760
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.761
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.760
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.771
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.760
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.713
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.760
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.716
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.681
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.758
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.688
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.698
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.680
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.742
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.700
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.692
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.757
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.731
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.740
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.723
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.698
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.724
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.678
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.742
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.701
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.701
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.703
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.703
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.718
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.721
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.687
MDP0000174352 Malus domestica MDP0000174352 I 0.732
MDP0000241650 Malus domestica MDP0000241650 I 0.760
MDP0000242611 Malus domestica MDP0000242611 I 0.760
MDP0000790788 Malus domestica MDP0000790788 I 0.777
mgf022971m Mimulus guttatus mgf022971m I 0.697
mgf024703m Mimulus guttatus mgf024703m I 0.747
mgf026339m Mimulus guttatus mgf026339m I 0.778
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.712
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.761
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.758
MTR_5g012910 Medicago truncatula MTR_5g012910 I 0.691
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.766
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.753
OB04G27840 Oryza brachyantha OB04G27840 I 0.679
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.722
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.722
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.722
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.722
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.722
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.722
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.722
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.722
orange1.1g024791m.g Citrus sinensis orange1.1g024791m.g I 0.677
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.760
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.722
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.722
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.722
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.695
OS02G0656600 Oryza sativa OS02G0656600 I 0.722
OS04G0549700 Oryza sativa OS04G0549700 I 0.722
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.722
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.722
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.742
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.688
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.713
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.703
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.737
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.781
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.716
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.786
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.684
PK01156.1 Cannabis sativa PK01156.1 I 0.677
PK25970.1 Cannabis sativa PK25970.1 I 0.685
PK28082.1 Cannabis sativa PK28082.1 I 0.760
Pm005151 Prunus mume Pm005151 I 0.760
Pm017610 Prunus mume Pm017610 I 0.701
Pm019386 Prunus mume Pm019386 I 0.688
Pm023417 Prunus mume Pm023417 I 0.685
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.701
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.702
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.760
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.701
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.685
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.702
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.702
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.760
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.684
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.722
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.691
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.693
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.693
Si010703m.g Setaria italica Si010703m.g I 0.722
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.786
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.690
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.737
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.701
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.742
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.713
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.713
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.684
TCM_005639 Theobroma cacao TCM_005639 I 0.703
TCM_014892 Theobroma cacao TCM_014892 I 0.692
TCM_015930 Theobroma cacao TCM_015930 I 0.678
TCM_028851 Theobroma cacao TCM_028851 I 0.698
TCM_037194 Theobroma cacao TCM_037194 I 0.760
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.701
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.726
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.741
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.758
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.697
TINY Arabidopsis thaliana AT5G25810 D 0.785
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.757
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.722
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.722
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.712
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.759
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.747
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.759
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.760
VIT_06s0061g01390 Vitis vinifera VIT_06s0061g01390 I 0.685
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.682
VIT_14s0006g02290 Vitis vinifera VIT_14s0006g02290 I 0.687
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.761