Lus10040403.g (Linum usitatissimum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Lus10040403.g T023575_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.876 0.876
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10040403 B3 107 209

Links

Other B3 family TFs
Other Linum usitatissimum TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27494.m000045 Ricinus communis 27494.m000045 I 0.959
27538.m000327 Ricinus communis 27538.m000327 I 0.835
29908.m005953 Ricinus communis 29908.m005953 I 0.711
30078.m002329 Ricinus communis 30078.m002329 I 0.845
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.835
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.786
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.814
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.835
ARF10 Arabidopsis thaliana AT2G28350 I 0.835
ARF10 Oryza indica BGIOSGA016767 I 0.742
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.835
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.835
ARF16 Arabidopsis thaliana AT4G30080 D 0.876
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.876
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.845
ARF18 Oryza sativa OS06G0685700 I 0.835
ARF22 Oryza sativa OS10G0479900 I 0.845
ARF8 Oryza sativa OS02G0628600 I 0.814
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.814
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.845
Bo1g014600 Brassica oleracea Bo1g014600 I 0.866
Bo4g071620 Brassica oleracea Bo4g071620 I 0.835
Bo7g114200 Brassica oleracea Bo7g114200 I 0.876
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.835
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.876
Bra011162 Brassica rapa Bra011162 I 0.876
Bra011955 Brassica rapa Bra011955 I 0.835
Bra024109 Brassica rapa Bra024109 I 0.866
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.835
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.845
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.823
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.750
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.876
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.835
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.876
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.835
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.856
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.711
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.876
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.835
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.825
Ca_02541 Cicer arietinum Ca_02541 I 0.854
Ca_08488 Cicer arietinum Ca_08488 I 0.742
Ca_17136 Cicer arietinum Ca_17136 I 0.825
Ca_17624 Cicer arietinum Ca_17624 I 0.711
Ca_26121 Cicer arietinum Ca_26121 I 0.835
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.835
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.856
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.887
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.876
Cla008883 Citrullus lanatus Cla008883 I 0.887
Cla013979 Citrullus lanatus Cla013979 I 0.835
Cla018574 Citrullus lanatus Cla018574 I 0.856
Cla022413 Citrullus lanatus Cla022413 I 0.711
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.856
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.835
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.887
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.804
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.856
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.845
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.835
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.701
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.866
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.835
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.804
F775_32978 Aegilops tauschii F775_32978 I 0.835
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.711
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.856
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.835
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.825
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.835
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.856
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.835
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.835
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.845
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.845
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.835
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.835
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.845
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.814
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.845
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.814
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.948
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.845
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.804
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.833
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.835
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.835
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.876
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.835
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.845
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.814
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.732
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.812
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.814
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.773
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.897
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.845
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.814
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.856
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.825
Lus10023519.g Linum usitatissimum Lus10023519.g I 1.000
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.856
MDP0000131481 Malus domestica MDP0000131481 I 0.835
MDP0000221322 Malus domestica MDP0000221322 I 0.835
MDP0000750392 Malus domestica MDP0000750392 I 0.835
mgf000336m Mimulus guttatus mgf000336m I 0.804
mgf005300m Mimulus guttatus mgf005300m I 0.835
mgf016139m Mimulus guttatus mgf016139m I 0.833
mgf024607m Mimulus guttatus mgf024607m I 0.845
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.845
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.823
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.835
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.856
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.835
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.835
OB02G32150 Oryza brachyantha OB02G32150 I 0.823
OB04G25990 Oryza brachyantha OB04G25990 I 0.732
OB06G32920 Oryza brachyantha OB06G32920 I 0.835
OB09G15010 Oryza brachyantha OB09G15010 N 0.711
OB10G20590 Oryza brachyantha OB10G20590 I 0.845
OBART04G18910 Oryza barthii OBART04G18910 I 0.742
OBART06G25230 Oryza barthii OBART06G25230 I 0.835
OBART10G13410 Oryza barthii OBART10G13410 I 0.845
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.742
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.814
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.835
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.845
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.804
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.804
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.814
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.742
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.835
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.845
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.814
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.835
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.742
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.845
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.814
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.742
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.835
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.845
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.887
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.856
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.876
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.814
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.742
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.835
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.845
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.814
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.717
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.835
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.845
OS04G0519700 Oryza sativa OS04G0519700 I 0.742
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.825
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.781
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.821
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.701
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.781
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.835
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.711
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.868
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.844
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.856
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.724
PK10136.1 Cannabis sativa PK10136.1 I 0.753
PK13064.1 Cannabis sativa PK13064.1 I 0.835
PK13393.1 Cannabis sativa PK13393.1 I 0.887
PK17007.1 Cannabis sativa PK17007.1 I 0.866
Pm018533 Prunus mume Pm018533 I 0.866
Pm030120 Prunus mume Pm030120 I 0.856
Pm031275 Prunus mume Pm031275 I 0.835
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.835
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.701
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.794
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.887
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.887
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.814
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.835
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.825
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.856
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.866
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.711
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.814
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.794
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.835
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.701
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.876
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.866
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.814
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.845
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.833
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.835
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.773
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.794
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.794
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.773
Si005991m.g Setaria italica Si005991m.g I 0.835
Si009541m.g Setaria italica Si009541m.g I 0.732
Si016509m.g Setaria italica Si016509m.g I 0.833
Si034525m.g Setaria italica Si034525m.g I 0.845
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.724
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.856
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.742
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.835
TCM_022163 Theobroma cacao TCM_022163 I 0.845
TCM_035002 Theobroma cacao TCM_035002 I 0.711
TCM_042067 Theobroma cacao TCM_042067 I 0.835
TCM_043157 Theobroma cacao TCM_043157 I 0.887
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.835
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.876
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.802
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.764
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.835