Gfo_R011707 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R011707 T135829_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R011707 C2H2 ZF 297 318
Gfo_R011707 C2H2 ZF 325 347
Gfo_R011707 C2H2 ZF 353 375

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000639 Ricinus communis 27810.m000639 I 0.000
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I 0.000
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.000
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.000
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.000
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.000
Bo2g016490 Brassica oleracea Bo2g016490 I 0.000
Bo4g111040 Brassica oleracea Bo4g111040 I 0.000
Bo8g092010 Brassica oleracea Bo8g092010 I 0.000
Bo9g155940 Brassica oleracea Bo9g155940 I 0.000
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.000
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.000
Bra002159 Brassica rapa Bra002159 I 0.000
Bra007341 Brassica rapa Bra007341 I 0.000
Bra014617 Brassica rapa Bra014617 I 0.000
Bra023674 Brassica rapa Bra023674 I 0.000
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.000
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.000
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.000
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.000
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.000
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.000
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.000
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.000
Ca_07264 Cicer arietinum Ca_07264 I 0.000
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.000
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.000
Cla017778 Citrullus lanatus Cla017778 I 0.000
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.000
DREB2E Oryza sativa OS03G0174400 I 0.000
DREB2F Arabidopsis thaliana AT3G57600 D 0.000
DREB2G Arabidopsis thaliana AT5G18450 D 0.000
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.000
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I 0.000
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.000
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.000
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.000
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.000
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.000
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.000
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.000
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.000
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.000
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.000
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.000
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.000
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I 0.000
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.000
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.000
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.000
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.000
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.000
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.000
MDP0000703626 Malus domestica MDP0000703626 I 0.000
MDP0000871361 Malus domestica MDP0000871361 I 0.000
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.000
OBART03G05550 Oryza barthii OBART03G05550 I 0.000
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.000
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.000
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.000
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.000
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.000
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.000
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.000
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.000
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.000
PK08602.1 Cannabis sativa PK08602.1 D 0.000
Pm025865 Prunus mume Pm025865 I 0.000
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.000
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.000
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.000
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.000
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.000
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.000
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.000
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.000
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.000
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.000
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.000
TCM_024756 Theobroma cacao TCM_024756 I 0.000
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.000
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.000
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.000
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.000