estExt_fgenesh1_pg.C_sca_2_chr3_3_00476 (Nectria haematococca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 estExt_fgenesh1_pg.C_sca_2_chr3_3_00476 T138552_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU03975
M01879_2.00 		Neurospora crassa
NNRCWYDDNN
NNHHRWGYNN		 PBM
Weirauch et al.(2014)
pTH9677 		0.792 0.913
HCBG_04116
M01448_2.00 		Histoplasma capsulatum
RHCHGWGCDB
VHGCWCDGDY		 PBM
Najafabadi et al.(2015a)
pTH11149 		0.787 0.891
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476 C2H2 ZF 110 132
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476 C2H2 ZF 138 162
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476 C2H2 ZF 168 190
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476 C2H2 ZF 196 220

Links

Other C2H2 ZF family TFs
Other Nectria haematococca TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_002_01194 Aquilegia coerulea Aquca_002_01194 N 0.000
BGIOSGA032378 Oryza indica BGIOSGA032378 N 0.000
BRADI3G21380 Brachypodium distachyon BRADI3G21380 N 0.000
BRADI3G21390 Brachypodium distachyon BRADI3G21390 N 0.000
GRMZM2G166230 Zea mays GRMZM2G166230 N 0.000
LPERR10G00510 Leersia perrieri LPERR10G00510 N 0.000
OB10G10650 Oryza brachyantha OB10G10650 N 0.000
OBART10G00640 Oryza barthii OBART10G00640 N 0.000
OGLUM10G00620 Oryza glumaepatula OGLUM10G00620 N 0.000
OGLUM10G00630 Oryza glumaepatula OGLUM10G00630 N 0.000
OGLUM10G00640 Oryza glumaepatula OGLUM10G00640 N 0.000
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.000
ONIVA10G01080 Oryza nivara ONIVA10G01080 N 0.000
ONIVA10G01090 Oryza nivara ONIVA10G01090 N 0.000
OPUNC03G13410 Oryza punctata OPUNC03G13410 N 0.000
OPUNC10G00600 Oryza punctata OPUNC10G00600 N 0.000
ORUFI10G00640 Oryza rufipogon ORUFI10G00640 N 0.000
ORUFI10G00650 Oryza rufipogon ORUFI10G00650 N 0.000
OS10G0114500 Oryza sativa OS10G0114500 N 0.000
OS10G0115200 Oryza sativa OS10G0115200 N 0.000
OS10G0115500 Oryza sativa OS10G0115500 N 0.000
Pavir.Ba02367 Panicum virgatum Pavir.Ba02367 N 0.000
Pavir.Ia04968 Panicum virgatum Pavir.Ia04968 N 0.000
Pavir.J31488 Panicum virgatum Pavir.J31488 N 0.000
Sb02g009750 Sorghum bicolor Sb02g009750 N 0.000
Sb02g009782 Sorghum bicolor Sb02g009782 N 0.000
Si029480m.g Setaria italica Si029480m.g N 0.000
Si036337m.g Setaria italica Si036337m.g N 0.000
Solyc04g008380.2 Solanum lycopersicum Solyc04g008380.2 N 0.000
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.000