Pavir.J16973 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J16973 T143419_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J16973.1.p C2H2 ZF 96 118
Pavir.J16973.1.p C2H2 ZF 156 178

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27494.m000045 Ricinus communis 27494.m000045 I 0.000
27538.m000327 Ricinus communis 27538.m000327 I 0.000
29908.m005953 Ricinus communis 29908.m005953 I 0.000
30078.m002329 Ricinus communis 30078.m002329 I 0.000
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.000
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.000
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.000
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.000
ARF10 Arabidopsis thaliana AT2G28350 I 0.000
ARF10 Oryza indica BGIOSGA016767 I 0.000
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.000
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.000
ARF16 Arabidopsis thaliana AT4G30080 D 0.000
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.000
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.000
ARF18 Oryza sativa OS06G0685700 I 0.000
ARF22 Oryza sativa OS10G0479900 I 0.000
ARF8 Oryza sativa OS02G0628600 I 0.000
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.000
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.000
Bo1g014600 Brassica oleracea Bo1g014600 I 0.000
Bo4g071620 Brassica oleracea Bo4g071620 I 0.000
Bo7g114200 Brassica oleracea Bo7g114200 I 0.000
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.000
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.000
Bra011162 Brassica rapa Bra011162 I 0.000
Bra011955 Brassica rapa Bra011955 I 0.000
Bra024109 Brassica rapa Bra024109 I 0.000
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.000
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.000
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.000
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.000
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.000
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.000
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.000
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.000
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.000
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.000
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.000
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.000
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.000
Ca_02541 Cicer arietinum Ca_02541 I 0.000
Ca_08488 Cicer arietinum Ca_08488 I 0.000
Ca_17136 Cicer arietinum Ca_17136 I 0.000
Ca_17624 Cicer arietinum Ca_17624 I 0.000
Ca_26121 Cicer arietinum Ca_26121 I 0.000
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.000
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.000
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.000
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.000
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.000
Cla008883 Citrullus lanatus Cla008883 I 0.000
Cla013979 Citrullus lanatus Cla013979 I 0.000
Cla018574 Citrullus lanatus Cla018574 I 0.000
Cla022413 Citrullus lanatus Cla022413 I 0.000
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.000
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.000
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.000
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.000
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.000
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.000
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.000
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.000
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.000
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.000
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.000
F775_32978 Aegilops tauschii F775_32978 I 0.000
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.000
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.000
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.000
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.000
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.000
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.000
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.000
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.000
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.000
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.000
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.000
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.000
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.000
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.000
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.000
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.000
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.000
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.000
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.000
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.000
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.000
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.000
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.000
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.000
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.000
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.000
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.000
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.000
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.000
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.000
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.000
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.000
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.000
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.000
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.000
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.000
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.000
MDP0000131481 Malus domestica MDP0000131481 I 0.000
MDP0000221322 Malus domestica MDP0000221322 I 0.000
MDP0000750392 Malus domestica MDP0000750392 I 0.000
mgf000336m Mimulus guttatus mgf000336m I 0.000
mgf005300m Mimulus guttatus mgf005300m I 0.000
mgf016139m Mimulus guttatus mgf016139m I 0.000
mgf024607m Mimulus guttatus mgf024607m I 0.000
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.000
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.000
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.000
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.000
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.000
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.000
OB02G32150 Oryza brachyantha OB02G32150 I 0.000
OB04G25990 Oryza brachyantha OB04G25990 I 0.000
OB06G32920 Oryza brachyantha OB06G32920 I 0.000
OB09G15010 Oryza brachyantha OB09G15010 N 0.000
OB10G20590 Oryza brachyantha OB10G20590 I 0.000
OBART04G18910 Oryza barthii OBART04G18910 I 0.000
OBART06G25230 Oryza barthii OBART06G25230 I 0.000
OBART10G13410 Oryza barthii OBART10G13410 I 0.000
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.000
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.000
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.000
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.000
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.000
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.000
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.000
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.000
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.000
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.000
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.000
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.000
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.000
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.000
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.000
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.000
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.000
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.000
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.000
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.000
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.000
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.000
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.000
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.000
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.000
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.000
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.000
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.000
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.000
OS04G0519700 Oryza sativa OS04G0519700 I 0.000
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.000
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.000
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.000
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.000
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.000
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.000
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.000
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.000
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.000
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.000
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.000
PK10136.1 Cannabis sativa PK10136.1 I 0.000
PK13064.1 Cannabis sativa PK13064.1 I 0.000
PK13393.1 Cannabis sativa PK13393.1 I 0.000
PK17007.1 Cannabis sativa PK17007.1 I 0.000
Pm018533 Prunus mume Pm018533 I 0.000
Pm030120 Prunus mume Pm030120 I 0.000
Pm031275 Prunus mume Pm031275 I 0.000
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.000
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.000
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.000
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.000
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.000
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.000
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.000
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.000
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.000
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.000
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.000
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.000
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.000
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.000
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.000
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.000
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.000
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.000
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.000
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.000
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.000
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.000
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.000
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.000
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.000
Si005991m.g Setaria italica Si005991m.g I 0.000
Si009541m.g Setaria italica Si009541m.g I 0.000
Si016509m.g Setaria italica Si016509m.g I 0.000
Si034525m.g Setaria italica Si034525m.g I 0.000
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.000
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.000
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.000
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.000
TCM_022163 Theobroma cacao TCM_022163 I 0.000
TCM_035002 Theobroma cacao TCM_035002 I 0.000
TCM_042067 Theobroma cacao TCM_042067 I 0.000
TCM_043157 Theobroma cacao TCM_043157 I 0.000
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.000
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.000
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.000
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.000
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.000